genome.fa.s3836.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003836.1 Hibiscus syriacus cultivar Beakdansim tig00008222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  532632

Tables:   1   2   3   

This is table  3  of  3  ( 279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456632--456688	24	2.4	26	75	19	61	47	0	1	50	1.11
456729--456759	2	15.5	2	100	0	62	48	0	0	51	1.00
459334--459382	21	2.5	20	87	9	66	30	22	18	28	1.97
471725--471825	34	3.2	34	67	18	99	42	3	4	48	1.43
471709--471840	61	2.2	61	94	0	228	44	3	3	47	1.39
479498--479806	43	7.2	43	77	7	220	33	19	22	25	1.97
479498--479804	86	3.6	86	80	5	311	33	19	22	25	1.97
482819--483183	41	8.9	41	81	4	391	32	16	19	31	1.94
482829--483183	124	2.9	122	82	6	419	32	17	19	30	1.95
482821--483183	83	4.4	83	88	2	464	32	16	19	31	1.94
487239--487274	18	1.9	19	94	5	65	0	69	0	30	0.89
488568--488593	6	4.3	6	100	0	52	38	46	0	15	1.46
489428--489499	37	1.9	37	94	0	126	38	26	12	22	1.89
489502--489559	16	3.6	16	90	0	89	25	25	6	41	1.80
494264--494337	16	4.6	16	82	0	94	27	24	5	43	1.76
504012--504059	23	2.1	23	100	0	96	41	8	39	10	1.69
511743--511850	23	4.6	24	75	9	89	31	25	22	21	1.98
511785--511877	23	4.0	23	84	2	116	30	26	21	21	1.98
511785--511894	46	2.4	46	84	3	132	32	25	20	20	1.97
511793--511894	23	4.4	23	82	0	105	33	25	19	21	1.97
513255--513310	18	3.3	18	75	14	73	21	41	19	17	1.91
513341--513382	21	2.0	21	85	0	57	33	21	23	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516675--516719	21	2.2	20	84	15	56	24	35	24	15	1.94
516743--516894	18	8.8	18	73	15	133	22	34	21	21	1.96
516779--516873	15	5.9	15	71	16	73	23	33	21	22	1.97
516761--516892	34	3.9	34	95	1	232	22	34	21	21	1.96
516761--516892	67	2.0	67	93	3	230	22	34	21	21	1.96
518388--518430	18	2.4	18	92	0	68	20	6	0	72	1.08
518471--518534	30	2.1	30	82	5	76	17	3	3	76	1.04
518473--518514	20	2.1	20	86	8	59	19	4	0	76	0.96
518491--518598	15	6.9	15	72	13	76	13	3	5	76	1.10
518491--518598	5	20.8	5	78	16	69	13	3	5	76	1.10
518473--518606	58	2.4	56	75	16	143	14	5	4	75	1.15
518617--518681	28	2.4	28	79	7	71	26	4	1	67	1.18
522684--523393	210	3.4	203	78	7	698	29	16	21	32	1.95
527479--527574	39	2.5	40	73	19	103	17	7	58	16	1.60
527530--527588	27	2.2	27	81	6	66	20	3	59	16	1.51
529884--529940	30	1.9	30	88	0	87	59	5	8	26	1.48
532132--532630	3	170.0	3	86	11	716	0	31	0	68	0.93

Tables:   1   2   3

The End!