genome.fa.s3856.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003856.1 Hibiscus syriacus cultivar Beakdansim tig00008289_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  822684

Tables:   1   2   3   4   

This is table  2  of  4  ( 415 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265163--265241	23	3.5	22	68	18	65	29	24	25	21	1.99
265762--265858	48	2.0	48	100	0	194	40	18	10	30	1.84
270587--270712	64	2.0	64	96	3	238	23	19	15	41	1.90
270945--271154	65	3.3	65	79	5	196	27	19	23	30	1.98
273423--273486	27	2.5	26	80	14	73	26	25	26	21	2.00
279288--279453	65	2.6	63	80	7	174	27	17	23	31	1.97
282574--282624	19	2.7	19	82	8	61	25	35	15	23	1.94
282572--282732	66	2.5	62	81	7	162	31	26	16	26	1.96
288702--288759	22	2.7	22	82	10	68	29	27	17	25	1.97
291331--291369	19	2.1	19	95	0	69	20	38	15	25	1.92
291318--291478	65	2.5	65	84	3	220	30	27	16	26	1.96
297085--297140	22	2.7	21	83	10	62	30	23	17	28	1.97
298638--298681	21	2.1	21	86	0	61	9	36	15	38	1.80
299708--299758	19	2.7	19	80	19	63	23	33	15	27	1.95
299706--299866	65	2.5	65	84	5	202	29	25	16	27	1.97
300704--300787	43	2.0	43	90	0	132	35	13	22	28	1.92
303788--303844	15	3.7	15	79	13	55	68	1	5	24	1.20
304931--304999	3	22.7	3	94	2	120	66	1	0	31	1.00
305205--305275	35	2.0	35	100	0	142	33	8	28	29	1.86
306394--306477	29	2.9	28	77	7	78	39	10	25	25	1.87
309558--309627	2	35.0	2	100	0	140	50	0	0	50	1.00
309627--309682	2	28.0	2	92	0	94	3	0	46	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310645--310698	17	3.1	17	74	12	56	74	0	3	22	0.98
310646--310719	4	17.8	4	78	10	69	72	1	2	22	1.04
310646--310719	13	5.9	12	78	9	69	72	1	2	22	1.04
310658--310719	17	3.7	16	81	12	63	70	1	3	24	1.10
310834--310966	39	3.6	37	84	7	128	42	9	4	43	1.56
310738--310983	34	6.8	34	77	13	160	42	10	4	43	1.58
314399--314440	19	2.2	19	100	0	84	23	21	9	45	1.81
322379--322411	8	4.1	8	100	0	66	0	12	0	87	0.53
328666--328725	22	2.7	22	94	0	102	25	26	25	23	2.00
335566--335626	20	2.9	21	85	11	72	19	26	32	21	1.97
341557--341586	11	2.7	11	89	0	51	46	0	3	50	1.18
341543--341586	23	2.0	23	86	13	65	40	2	6	50	1.42
343114--343192	2	39.0	2	82	12	99	46	1	5	46	1.32
344608--344651	11	3.8	11	82	8	52	22	2	0	75	0.92
344615--344665	18	2.7	18	88	11	68	27	0	0	72	0.85
344607--344665	21	2.7	22	82	12	61	27	1	0	71	0.96
344615--344665	6	8.2	6	75	16	50	27	0	0	72	0.85
345532--345593	30	2.1	30	100	0	124	30	17	19	32	1.95
347052--347306	95	2.7	95	88	3	352	32	18	17	32	1.94
348414--349131	84	8.6	83	83	2	737	33	22	19	23	1.97
348412--349106	168	4.2	167	84	3	814	33	23	19	23	1.97
349626--349665	20	2.0	20	86	13	57	32	2	10	55	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349661--349714	20	2.6	21	75	21	60	48	11	0	40	1.39
351084--351134	25	2.0	25	82	14	61	29	3	0	66	1.09
351122--351171	18	2.8	18	75	25	52	32	8	2	58	1.39
353731--353986	95	2.7	95	87	3	338	33	19	16	31	1.93
356033--356292	95	2.7	95	89	3	380	31	17	17	32	1.94
357430--358078	84	7.8	84	84	0	734	34	22	19	23	1.96
357392--358131	84	8.9	83	81	1	723	33	22	19	23	1.97
358989--359042	20	2.6	21	75	21	60	48	11	0	40	1.39
363088--363338	95	2.6	94	84	8	317	32	16	17	33	1.93
364688--364712	7	3.6	7	100	0	50	44	0	12	44	1.41
368753--369010	95	2.7	94	86	4	331	32	17	18	31	1.94
370130--370588	84	5.5	83	79	4	422	34	23	20	22	1.97
370190--370623	168	2.6	168	82	2	498	33	23	19	23	1.97
372612--372652	9	4.9	8	85	8	55	24	2	0	73	0.96
373567--373628	23	2.9	21	77	13	63	30	16	22	30	1.96
375583--375623	22	2.0	22	90	9	68	21	0	12	65	1.25
377953--378000	22	2.2	23	89	10	75	20	0	14	64	1.28
380334--380382	19	2.6	19	96	0	89	22	20	30	26	1.98
381457--381489	17	1.9	17	88	11	50	27	0	0	72	0.85
382677--382790	55	2.1	55	83	6	142	41	23	10	24	1.86
383104--383333	118	1.9	118	98	0	442	23	22	23	30	1.99
384708--384888	75	2.4	75	82	6	197	26	22	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395455--395498	23	1.9	23	85	0	61	15	20	13	50	1.78
412769--412808	2	20.0	2	100	0	80	50	0	0	50	1.00
418243--418299	22	2.8	21	80	15	57	47	1	1	49	1.22
420512--420550	18	2.2	18	100	0	78	28	30	5	35	1.79
421797--421840	22	2.0	22	86	8	63	29	0	6	63	1.20
426659--426704	21	2.2	21	84	0	56	39	23	4	32	1.75
426666--426715	21	2.4	21	93	0	82	36	20	10	34	1.86
429203--429243	3	13.7	3	100	0	82	34	0	0	65	0.93
433865--433950	24	3.6	24	85	3	129	37	19	15	27	1.92
436147--436222	36	2.1	35	85	2	98	35	28	23	11	1.90
436300--436390	24	3.8	24	85	2	121	37	19	17	25	1.94
436300--436390	47	1.9	48	88	2	139	37	19	17	25	1.94
438679--438731	18	3.2	18	70	25	62	13	20	47	18	1.82
438690--438737	13	3.9	13	78	13	57	12	20	47	18	1.81
439169--439234	32	2.1	32	100	0	132	22	24	31	21	1.98
446166--446378	105	2.0	105	93	1	365	31	9	24	33	1.87
457164--457212	21	2.3	21	96	0	89	30	4	4	61	1.33
460830--460890	20	3.1	19	81	9	68	44	19	18	18	1.87
460863--460941	40	2.0	40	87	0	113	41	17	16	24	1.89
460906--460951	20	2.3	20	84	0	65	45	21	15	17	1.85
460866--460951	40	2.2	40	84	0	109	43	19	15	22	1.88
461030--461281	126	2.1	123	86	6	354	35	20	17	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461166--461218	20	2.7	20	82	11	72	43	18	16	20	1.88
461097--461464	126	2.9	125	86	2	443	35	21	16	26	1.95
461679--461728	21	2.4	21	96	0	91	16	16	32	36	1.90
461762--461816	22	2.7	20	72	10	56	45	18	14	21	1.85
461947--462041	40	2.4	42	82	13	128	18	17	20	43	1.89
461973--462035	20	3.2	20	83	0	90	20	20	17	41	1.91
464502--464549	24	2.0	24	88	4	71	18	22	31	27	1.97
469207--469254	24	2.0	24	88	4	71	20	22	29	27	1.99
471212--471330	27	4.1	27	67	16	69	50	3	4	42	1.38
471705--471757	21	2.5	21	84	0	70	20	24	15	39	1.91
471768--471831	21	3.1	21	86	4	103	40	17	20	21	1.91
471765--471831	20	3.3	20	85	4	98	38	17	22	20	1.93
472027--472092	22	3.0	22	84	4	89	24	37	15	22	1.92
472385--472474	19	4.6	19	81	9	110	51	20	16	12	1.76
472386--472474	40	2.3	38	80	14	67	50	20	16	12	1.77
472522--472610	14	5.6	14	69	23	61	11	23	22	42	1.85
472505--472631	33	3.8	33	88	3	184	11	22	22	43	1.85
472505--472660	66	2.2	70	87	9	223	12	23	19	44	1.84
474119--474494	94	4.1	93	94	2	616	21	12	18	47	1.81
474585--474665	19	4.2	19	92	3	135	49	17	22	11	1.77
474591--474683	39	2.4	39	87	3	125	48	20	20	10	1.79
474679--474799	19	6.5	19	75	12	108	13	19	19	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474679--474775	39	2.8	33	78	17	113	12	20	19	47	1.81
474709--474799	19	4.6	19	83	5	110	12	19	19	48	1.80
474702--474799	39	2.5	39	89	1	142	12	20	18	48	1.79
475252--475318	21	3.2	21	66	6	55	23	35	20	19	1.95
475200--475318	42	2.8	42	81	5	107	22	36	18	22	1.95
476634--476673	13	3.0	13	78	7	53	27	0	15	57	1.38
476803--476933	19	7.7	19	69	23	103	12	23	18	45	1.84
476807--476933	33	3.8	33	93	0	218	13	23	18	44	1.85
476873--476960	19	4.8	19	76	17	62	18	22	18	40	1.91
476927--476999	20	3.6	20	68	17	60	24	19	23	32	1.97

Tables:   1   2   3   4