Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003856.1 Hibiscus syriacus cultivar Beakdansim tig00008289_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  822684

Tables:   1   2   3   4   

This is table  4  of  4  ( 415 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
716675--716719
21
2.1
21
87
0
63
15
24
28
31
1.96
726684--726755
21
3.4
21
79
7
83
43
18
36
2
1.64
727169--727414
43
5.7
43
79
4
176
34
25
16
22
1.95
731530--732110
266
2.2
266
86
6
813
40
19
12
26
1.88
739114--739153
16
2.6
16
88
4
55
37
7
20
35
1.81
741737--741976
55
4.4
56
84
2
211
28
21
20
29
1.98
741783--741976
55
3.5
55
87
1
255
28
21
21
28
1.98
741831--741974
28
5.2
28
65
18
77
29
18
22
29
1.97
742426--742661
11
21.9
11
65
21
67
73
2
7
16
1.18
742404--742454
17
3.1
17
75
18
54
78
3
5
11
1.06
742407--742664
6
40.3
6
67
20
50
73
2
7
16
1.18
742516--742659
45
3.4
41
77
13
114
74
0
9
15
1.11
742606--742644
8
5.4
8
87
12
50
74
0
12
12
1.08
742623--742661
5
7.2
5
91
8
51
74
0
7
17
1.05
742583--742661
28
3.0
27
76
18
78
75
0
8
15
1.02
744910--745018
41
2.6
42
81
5
132
22
12
32
33
1.92
745321--745347
14
1.9
14
100
0
54
22
14
22
40
1.90
752955--752996
18
2.3
18
91
0
66
33
33
19
14
1.91
753647--753684
20
1.9
20
100
0
76
28
23
15
31
1.96
756221--756270
17
2.9
17
82
8
66
76
0
8
16
1.02
756208--756289
5
15.4
5
75
15
67
73
2
6
18
1.15
756308--756347
19
2.1
19
90
0
62
72
0
2
25
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
758051--758095
22
2.0
23
86
4
65
24
26
13
35
1.92
758135--758185
21
2.7
18
80
16
59
23
29
17
29
1.97
760268--760596
53
6.1
53
81
6
274
27
21
21
29
1.99
760315--760596
53
5.3
54
81
4
297
27
22
21
28
1.99
760315--760596
108
2.6
108
84
7
369
27
22
21
28
1.99
760950--761140
94
2.0
96
83
8
239
26
26
15
31
1.96
761014--761063
22
2.3
23
86
6
68
22
34
12
32
1.90
763480--763506
14
1.9
14
100
0
54
59
11
14
14
1.62
763723--763768
21
2.1
22
88
4
67
26
6
19
47
1.73
765036--765083
14
3.4
14
83
8
62
12
8
18
60
1.57
765250--765388
10
13.2
10
68
20
63
9
10
20
58
1.59
765246--765404
47
3.4
47
90
0
237
10
11
20
58
1.61
765423--765503
31
2.6
31
96
0
144
45
25
13
14
1.82
765718--765763
6
7.7
6
95
0
65
65
6
0
28
1.17
773734--773968
115
2.0
116
94
1
409
30
23
14
31
1.95
776315--776372
4
14.0
4
77
10
55
68
3
5
22
1.24
778071--778269
5
40.4
5
94
5
361
59
0
0
40
0.97
778739--778949
107
2.0
106
83
2
262
21
19
25
33
1.97
778855--779208
65
5.5
65
90
2
500
20
20
25
33
1.97
790647--790704
4
14.0
4
77
10
55
68
3
5
22
1.24
790706--790730
9
2.8
9
100
0
50
88
0
0
12
0.53
790711--790792
35
2.5
31
73
13
83
70
4
6
18
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
795976--796014
16
2.5
16
80
19
55
38
0
0
61
0.96
802582--802821
118
2.0
118
96
1
446
47
4
8
39
1.53
803812--803842
16
1.9
16
93
0
53
58
19
12
9
1.62
805823--805898
36
2.1
36
97
0
143
43
14
10
31
1.79
810326--810355
15
2.0
15
100
0
60
13
46
26
13
1.80
810777--810852
36
2.1
36
97
0
143
43
14
10
31
1.79
815218--815247
15
2.0
15
100
0
60
13
46
26
13
1.80
815669--815743
35
2.1
36
95
2
134
42
14
10
32
1.80
820194--820223
15
2.0
15
100
0
60
13
46
26
13
1.80
820635--820715
35
2.2
36
93
4
137
43
14
11
30
1.81
821797--821950
65
2.4
65
96
0
281
43
17
2
36
1.63

Tables:   1   2   3   4

The End!