genome.fa.s3942.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003942.1 Hibiscus syriacus cultivar Beakdansim tig00008518_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  365498

Tables:   1   2   3   

This is table  2  of  3  ( 295 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144972--145174	42	4.8	42	79	2	194	22	36	17	22	1.94
145108--145174	21	3.2	21	66	6	55	23	35	20	19	1.95
144969--145144	84	2.1	84	98	0	343	21	38	17	23	1.93
144969--145174	84	2.5	84	92	1	306	22	36	17	22	1.95
146530--146565	14	2.6	14	95	0	63	30	0	25	44	1.54
146690--146746	14	3.7	14	75	20	60	43	22	24	8	1.81
146672--146761	33	2.7	33	92	0	144	44	21	21	13	1.85
146672--146732	19	3.5	19	72	21	60	45	21	21	11	1.82
146757--146907	19	8.7	19	63	21	71	15	21	20	42	1.89
146761--146887	33	3.9	32	86	8	184	14	22	19	43	1.88
146754--146886	66	2.0	66	95	0	239	16	21	19	42	1.89
149170--149207	15	2.5	15	95	0	67	5	18	21	55	1.62
149198--149222	12	2.1	12	100	0	50	0	28	0	72	0.86
149397--149450	24	2.2	24	90	0	81	40	20	16	22	1.91
150197--150245	20	2.5	20	96	0	89	32	18	28	20	1.96
150458--150507	19	2.5	20	96	3	93	32	28	24	16	1.96
150533--150597	19	3.7	19	86	13	95	13	21	18	46	1.84
150603--150641	20	2.0	20	94	0	69	12	10	30	46	1.75
152624--152670	20	2.3	20	85	0	58	40	25	19	14	1.90
152636--152691	20	2.8	20	81	2	69	39	21	23	16	1.92
152680--152737	14	3.9	14	75	16	62	48	22	17	12	1.80
152664--152742	32	2.4	33	93	2	133	46	21	18	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152771--152828	14	3.9	14	79	16	71	10	17	24	48	1.78
152754--152844	32	2.8	33	91	3	148	14	18	19	47	1.83
152749--152864	19	6.6	19	71	17	74	15	21	19	43	1.88
152829--152872	20	2.2	20	92	4	72	20	25	18	36	1.95
153365--153409	18	2.5	18	92	0	72	15	15	42	26	1.87
154729--154787	20	3.0	20	87	0	73	42	22	18	16	1.89
155276--155328	20	2.7	20	90	0	79	26	18	28	26	1.98
155283--155389	41	2.7	40	76	2	106	25	16	25	32	1.96
155337--155390	20	2.7	20	97	0	99	25	16	24	33	1.96
156780--156812	16	2.0	17	88	5	50	39	9	0	51	1.34
156842--156891	26	1.9	26	84	8	66	50	4	4	42	1.40
158070--158114	12	3.9	12	88	5	67	55	0	0	44	0.99
158070--158118	10	4.5	10	79	18	53	57	0	0	42	0.99
161151--161204	27	1.9	29	85	14	78	51	0	1	46	1.11
162747--162787	2	20.5	2	100	0	82	48	0	0	51	1.00
170395--170478	32	2.7	33	78	17	90	36	19	11	32	1.88
170765--170794	14	2.2	13	94	5	51	40	0	3	56	1.16
171077--171104	14	2.0	14	100	0	56	35	0	0	64	0.94
171438--171480	19	2.3	19	87	0	59	37	6	18	37	1.78
172533--172575	16	2.7	16	79	10	52	44	2	0	53	1.13
172540--172575	17	2.2	16	90	5	54	41	2	0	55	1.14
173359--173770	5	80.6	5	70	18	146	74	1	7	16	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173343--173773	17	23.8	17	68	22	140	74	2	6	16	1.13
173343--173685	9	38.1	9	67	22	61	74	1	6	17	1.11
173434--173500	29	2.3	29	92	0	107	77	5	4	11	1.09
173464--173658	4	45.8	4	72	21	107	74	0	3	21	0.98
173463--173689	6	36.3	6	70	19	96	74	0	3	20	1.00
173463--173679	38	5.8	37	74	18	161	75	0	3	20	0.99
173449--173689	84	2.9	79	76	17	217	74	0	4	20	1.03
173453--173683	48	4.5	51	74	20	171	74	0	3	20	1.02
173523--173718	29	7.0	28	72	18	108	73	0	6	19	1.05
173669--173727	29	2.1	29	84	6	77	74	0	15	10	1.06
175538--175855	85	3.7	85	87	1	415	25	17	22	34	1.96
175902--176079	85	2.1	85	84	2	223	27	16	20	35	1.94
176612--176970	64	5.6	64	91	2	551	30	12	21	36	1.90
181976--182389	22	20.8	20	71	20	189	75	0	7	16	1.06
182068--182380	6	51.0	6	69	19	150	76	0	5	17	0.99
182072--182398	159	2.0	161	84	10	429	76	0	6	16	1.01
182061--182398	67	5.2	62	77	15	215	76	0	6	16	1.02
183293--183325	13	2.6	13	90	4	50	15	9	9	66	1.43
184528--184562	2	17.5	2	100	0	70	48	0	0	51	1.00
186204--186300	28	3.4	28	76	11	81	46	0	1	52	1.07
186240--186319	33	2.6	30	86	9	101	48	0	2	48	1.14
186274--186337	33	1.9	33	81	12	78	51	0	3	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186308--186378	31	2.4	30	76	21	78	52	0	2	45	1.15
186362--186412	23	2.2	23	82	0	57	45	1	1	50	1.24
186586--186632	22	2.1	23	88	4	69	53	0	2	44	1.12
186594--186637	22	2.0	22	82	8	54	54	0	2	43	1.12
188392--188446	3	18.3	3	100	0	110	67	0	0	32	0.91
188528--188559	12	2.7	12	95	0	55	75	3	6	15	1.14
188510--188589	17	4.8	16	69	18	56	77	3	7	11	1.10
188752--188795	9	4.9	9	82	0	61	81	0	4	13	0.83
188725--188794	27	2.6	26	84	11	79	74	0	5	20	1.02
190984--191391	110	3.7	110	90	1	618	25	17	22	35	1.95
193050--193155	7	15.0	7	73	15	76	2	13	5	78	1.04
193055--193156	43	2.4	42	84	9	120	2	12	5	78	1.04
193055--193147	18	5.1	18	78	8	89	3	11	5	79	1.01
193089--193162	16	4.6	16	70	18	55	0	14	5	79	0.90
193089--193162	32	2.3	32	83	4	87	0	14	5	79	0.90
196325--196384	6	10.2	6	87	3	77	76	1	5	16	1.04
196325--196384	18	3.4	18	88	2	86	76	1	5	16	1.04
196329--196384	24	2.4	23	93	3	94	76	1	5	16	1.05
196582--196625	18	2.5	18	79	17	56	75	0	4	20	0.98
201429--201463	16	2.1	17	89	5	54	2	34	0	62	1.10
208213--208266	21	2.6	21	93	0	90	22	22	25	29	1.99
208824--209165	168	2.0	171	97	2	645	36	16	11	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209227--209280	22	2.5	22	81	0	72	24	18	20	37	1.94
209551--209594	21	2.2	20	87	4	61	34	15	6	43	1.74
211318--211395	30	2.6	30	82	11	97	32	17	8	41	1.81
217722--217787	32	2.1	32	94	2	116	9	12	25	53	1.67
217737--217789	16	3.3	16	69	10	54	9	15	24	50	1.73
222130--222176	22	2.1	23	84	4	60	38	27	10	23	1.88
244251--244278	14	2.0	14	100	0	56	28	28	0	42	1.56
244264--244384	60	2.0	60	83	1	154	28	21	5	43	1.75
244540--244683	60	2.4	59	83	2	180	43	6	16	33	1.75
247080--247132	27	2.0	27	96	0	97	37	47	5	9	1.60
247077--247126	15	3.5	15	71	15	52	38	46	6	10	1.62
252017--252183	5	33.4	5	100	0	334	40	0	0	59	0.97
255248--255301	16	3.2	16	76	5	54	70	1	1	25	1.07
269146--269216	35	2.0	35	94	0	124	39	9	21	29	1.85
269703--269747	2	22.5	2	100	0	90	48	0	0	51	1.00
281612--282058	109	4.1	109	94	0	779	31	27	19	20	1.97
282511--282582	35	2.1	35	97	0	135	38	11	20	29	1.87
283201--283227	2	13.5	2	100	0	54	48	0	0	51	1.00
286126--286193	35	1.9	35	87	0	100	44	22	0	33	1.53
286198--286271	35	2.1	35	82	2	87	35	0	22	41	1.54
288351--288411	30	2.0	30	87	6	88	24	18	22	34	1.96
292060--292085	6	4.3	6	100	0	52	69	0	15	15	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297737--297762	12	2.2	12	100	0	52	57	7	0	34	1.27
297788--297834	19	2.5	19	75	3	51	57	2	0	40	1.11
298148--298229	32	2.6	32	83	9	98	42	14	10	31	1.81
298211--298262	16	3.3	15	74	12	50	53	19	3	23	1.61
300308--300350	16	2.6	17	77	3	52	58	0	0	41	0.98
300457--300501	23	1.9	24	82	13	58	40	2	0	57	1.11
305489--305565	10	8.4	10	71	22	62	55	0	0	44	0.99
305492--305568	8	9.0	8	72	25	52	57	0	0	42	0.99
305483--305568	29	3.1	27	80	11	93	55	0	1	43	1.07
305492--305571	37	2.3	32	85	10	106	56	0	0	43	0.99

Tables:   1   2   3