genome.fa.s398.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000398.1 Hibiscus syriacus cultivar Beakdansim tig00000731_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  357049

Tables:   1   2   3   

This is table  2  of  3  ( 301 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192293--192323	11	2.8	11	100	0	62	77	6	16	0	0.97
192293--192341	22	2.1	24	85	7	66	73	8	14	4	1.21
192287--192330	11	3.9	11	87	3	52	77	4	15	2	1.04
193480--193590	36	3.1	36	81	1	132	32	22	8	36	1.84
193480--193582	37	2.8	37	82	1	118	33	23	7	35	1.83
194006--194184	36	5.4	35	64	20	89	25	17	13	42	1.87
193932--194184	65	3.9	65	85	3	316	26	17	13	41	1.87
194233--194486	134	1.9	134	81	4	307	29	30	14	25	1.95
199360--199466	36	3.0	36	62	28	84	15	14	17	52	1.75
205839--205887	24	2.0	24	96	0	89	24	32	14	28	1.94
207667--207884	109	2.0	109	89	1	330	36	10	22	30	1.88
208598--208634	18	2.1	18	94	0	65	43	5	2	48	1.40
208720--208760	16	2.4	18	80	19	61	53	4	0	41	1.22
209120--209178	22	2.7	22	100	0	118	37	23	13	25	1.92
209083--209185	22	4.7	22	81	4	109	39	26	10	23	1.87
210204--210251	17	2.7	18	84	12	64	37	18	6	37	1.76
210525--210624	15	5.8	16	69	25	62	77	2	7	14	1.07
210525--210635	8	13.4	8	66	19	50	78	2	6	12	1.04
210571--210647	17	4.5	17	74	18	70	77	6	3	11	1.08
211978--212171	107	1.8	106	87	5	293	40	5	6	47	1.52
214766--214795	12	2.4	13	94	5	53	73	6	0	20	1.05
215524--215576	23	2.4	24	81	15	69	62	11	7	18	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216524--216583	27	2.2	27	85	5	77	25	11	11	51	1.72
225113--225137	12	2.1	12	100	0	50	68	0	0	32	0.90
227078--227160	22	3.8	22	85	6	98	20	18	27	33	1.96
242720--242747	2	14.0	2	100	0	56	50	0	0	50	1.00
242934--242994	27	2.2	27	82	8	70	31	9	22	36	1.87
243159--243228	23	3.0	23	89	0	104	28	14	22	34	1.93
259148--259172	13	1.9	13	100	0	50	40	16	24	20	1.91
259586--259616	15	2.0	15	93	6	53	58	0	0	41	0.98
259594--259956	177	2.1	175	94	3	640	40	6	6	46	1.55
263209--263249	15	2.7	16	81	11	50	36	0	2	60	1.10
264513--264551	20	2.0	19	90	5	60	28	0	0	71	0.86
264634--264671	17	2.2	17	90	9	60	28	0	0	71	0.87
265253--265325	37	2.1	37	92	7	125	31	9	0	58	1.30
266803--266843	7	6.0	7	81	13	50	14	17	14	53	1.73
266900--266947	12	3.8	12	81	10	60	22	12	8	56	1.63
269786--269832	17	2.7	18	80	9	62	76	0	14	8	1.01
269786--269831	16	2.7	17	83	6	58	76	0	15	8	1.02
273099--273275	76	2.3	76	79	8	182	32	14	20	32	1.92
274543--274615	22	3.4	22	90	1	103	36	10	15	36	1.82
275268--275496	76	3.1	76	87	1	356	24	20	20	34	1.97
275494--276012	112	4.8	112	83	8	573	37	15	18	28	1.91
275494--276013	222	2.4	221	83	8	644	37	15	18	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276214--276640	110	3.8	111	77	8	447	38	14	19	27	1.90
276197--276698	222	2.3	220	84	2	675	39	14	19	27	1.90
277791--277819	11	2.6	11	100	0	58	62	0	37	0	0.96
278272--278308	15	2.5	15	91	8	58	27	0	0	72	0.84
278389--278618	120	1.9	117	82	8	288	37	7	7	46	1.62
278590--278644	28	2.0	26	82	6	65	49	1	0	49	1.11
280126--280260	71	1.9	71	85	0	189	31	20	19	29	1.97
280126--280258	35	3.8	35	72	7	108	31	19	18	30	1.96
282613--282652	18	2.4	17	87	8	55	32	0	40	27	1.57
284738--284897	65	2.5	63	85	6	205	30	24	19	25	1.98
292299--292457	64	2.5	62	85	7	203	30	23	19	26	1.98
294244--294303	27	2.2	27	81	0	66	23	16	15	45	1.85
294869--294931	19	3.3	19	79	2	72	31	15	31	20	1.94
296093--296133	18	2.3	19	87	8	59	63	2	0	34	1.08
311191--311219	2	14.5	2	100	0	58	51	0	0	48	1.00
314868--314892	13	1.9	13	100	0	50	80	0	4	16	0.87
317101--317142	3	14.0	3	100	0	84	66	0	0	33	0.92
323041--323119	21	4.0	20	71	23	60	64	1	1	32	1.09
323059--323092	9	3.9	9	92	7	61	64	0	0	35	0.94
323055--323092	17	2.3	17	95	4	69	65	0	0	34	0.93
323155--323196	19	2.2	20	91	4	68	66	0	0	33	0.92
323155--323196	10	4.3	10	87	6	68	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332734--332805	24	3.0	24	81	0	90	20	13	19	45	1.84
334068--334135	23	2.9	23	91	2	109	20	20	25	33	1.97
336137--336192	24	2.3	24	81	0	67	21	17	14	46	1.84
336418--336491	4	18.5	4	88	0	94	41	0	8	50	1.32
337086--337114	13	2.2	13	100	0	58	48	0	0	51	1.00
341688--341761	38	2.0	37	94	2	130	31	9	22	36	1.86
342041--342078	19	2.0	19	89	0	58	39	15	13	31	1.86
342035--342876	87	9.7	87	89	3	1245	39	17	11	31	1.85
342389--342428	19	2.1	19	85	0	53	37	20	10	32	1.85
342035--342876	173	4.9	175	90	2	1290	39	17	11	31	1.85
342035--357049	261	59.5	261	85	7	19225	38	17	11	32	1.86
342475--342514	19	2.1	19	90	0	62	37	17	12	32	1.87
342650--342687	19	2.0	19	89	0	58	39	15	13	31	1.86
342737--342776	19	2.1	19	90	0	62	37	17	12	32	1.87
342902--343118	87	2.5	87	93	1	364	38	17	11	32	1.86
342749--343031	153	1.8	154	90	3	462	39	16	10	32	1.83
342977--343016	19	2.1	19	90	0	62	37	17	12	32	1.87
343064--343103	19	2.1	19	85	0	53	37	20	10	32	1.85
343053--343185	67	2.0	66	91	1	212	44	16	7	31	1.76
342966--343272	154	2.0	153	92	1	517	40	17	10	31	1.84
343119--344752	87	18.8	87	90	1	2515	38	17	11	32	1.86
343306--343345	19	2.1	19	90	0	62	37	17	12	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343568--343607	19	2.1	19	85	0	53	35	17	12	35	1.88
343655--343694	19	2.1	19	90	0	62	37	17	12	32	1.87
343915--343952	19	2.0	19	89	0	58	39	15	13	31	1.86
344089--344126	19	2.0	19	89	0	58	39	15	13	31	1.86
344263--344302	19	2.1	19	90	9	64	40	15	12	32	1.84
344350--344389	19	2.1	19	85	0	53	35	15	12	37	1.85
344437--344476	19	2.1	19	90	0	62	37	17	12	32	1.87
344524--344561	19	2.0	19	89	0	58	39	15	13	31	1.86
344611--344650	19	2.1	19	85	0	53	40	17	10	32	1.83
344687--344818	66	2.0	66	89	0	201	43	15	8	32	1.77
344753--345045	87	3.4	87	90	1	453	40	17	10	31	1.84
344600--344905	153	2.0	153	91	3	492	40	16	10	32	1.83
344851--344890	19	2.1	19	90	0	62	37	17	12	32	1.87
344938--344977	19	2.1	19	85	0	53	37	20	10	32	1.85
344957--345113	68	2.3	68	96	0	287	38	19	11	31	1.87
344870--345200	155	2.1	155	90	1	520	37	19	11	32	1.87
345025--347749	87	31.4	87	88	2	3897	38	17	11	32	1.86
345025--353826	174	50.0	174	76	10	6146	38	17	11	32	1.86
345441--345480	19	2.1	19	90	0	62	37	17	12	32	1.87
345529--345565	19	1.9	19	88	0	56	40	10	16	32	1.83
345701--345738	19	2.0	19	94	0	67	42	13	13	31	1.82
345875--345912	19	2.0	19	89	0	58	39	15	13	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346140--346176	19	1.9	19	88	0	56	43	16	10	29	1.82
346224--346263	19	2.1	19	90	0	62	37	17	12	32	1.87
346397--346434	19	2.0	19	89	0	58	39	15	13	31	1.86
346919--346956	19	2.0	19	94	0	67	42	13	13	31	1.82
347092--347129	19	2.0	19	89	0	58	39	15	13	31	1.86
347351--347387	19	1.9	19	88	0	56	43	16	10	29	1.82
347435--347474	19	2.1	19	90	0	62	37	17	12	32	1.87
347611--347647	18	2.1	18	89	0	56	40	16	13	29	1.86
347686--347814	65	2.0	65	90	0	204	42	17	8	31	1.79
347751--348028	87	3.2	87	90	2	423	42	16	10	30	1.82

Tables:   1   2   3