genome.fa.s398.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000398.1 Hibiscus syriacus cultivar Beakdansim tig00000731_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  357049

Tables:   1   2   3   

This is table  3  of  3  ( 301 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347600--347901	152	2.0	151	90	3	473	40	16	10	31	1.83
347847--347884	19	2.0	19	89	0	58	39	15	13	31	1.86
347934--347973	19	2.1	19	86	9	55	40	17	10	32	1.83
347953--348109	68	2.3	68	90	2	244	37	18	10	33	1.86
348021--349877	87	21.4	87	88	1	2705	37	17	11	33	1.86
347866--348196	155	2.1	155	86	3	452	37	17	11	33	1.86
348610--348649	19	2.1	19	85	0	53	35	17	12	35	1.88
348784--348825	19	2.3	19	87	4	59	40	19	9	30	1.83
349041--349078	19	2.0	19	89	0	58	39	15	13	31	1.86
349215--349252	19	2.0	19	94	0	67	44	13	10	31	1.77
349475--349514	19	2.1	19	85	0	53	35	15	12	37	1.85
349649--349686	19	2.0	19	89	0	58	39	15	13	31	1.86
349812--349943	66	2.0	66	90	0	210	43	15	9	31	1.79
349890--349928	19	2.1	19	85	0	51	46	10	7	35	1.67
349725--350029	153	2.0	153	91	5	492	41	16	10	31	1.82
349976--350015	19	2.1	19	90	0	62	37	17	12	32	1.87
349878--350169	87	3.4	87	90	3	446	40	17	10	31	1.84
350062--350101	19	2.1	19	90	0	62	37	17	12	32	1.87
350081--350237	68	2.3	68	94	0	269	36	19	11	32	1.87
349995--350324	155	2.1	154	90	2	511	37	18	12	32	1.88
350478--350517	19	2.1	19	85	0	53	35	17	12	35	1.88
350149--352268	87	24.4	87	87	2	2998	38	16	11	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350651--350690	19	2.1	19	90	0	62	37	17	12	32	1.87
351260--351299	19	2.1	19	85	0	53	35	15	12	37	1.85
351432--351469	19	2.0	19	89	0	58	42	15	10	31	1.81
351604--351641	19	2.0	19	89	0	58	39	15	13	31	1.86
351778--351817	19	2.1	19	90	9	64	40	15	12	32	1.84
352040--352077	19	2.0	19	89	0	58	39	15	13	31	1.86
352203--352332	64	2.0	65	90	1	208	43	16	9	31	1.79
352268--352554	87	3.4	84	86	7	368	40	17	10	31	1.84
352365--352404	19	2.1	19	85	0	53	37	20	10	32	1.85
352116--352420	151	2.0	153	89	6	478	41	16	10	31	1.81
352452--352491	19	2.1	19	90	0	62	37	17	12	32	1.87
352384--352703	149	2.1	147	85	7	423	37	18	11	31	1.87
352534--357049	87	54.1	87	78	13	3645	37	17	12	32	1.86
352852--352891	19	2.1	19	85	0	53	35	17	12	35	1.88
352939--352977	19	2.1	19	90	0	60	38	15	12	33	1.85
353025--353064	19	2.1	19	90	0	62	37	17	12	32	1.87
353197--353234	19	2.0	19	89	0	58	39	15	13	31	1.86
353284--353321	19	2.0	19	89	0	58	39	15	13	31	1.86
353545--353584	19	2.1	19	85	0	53	35	15	12	37	1.85
353632--353669	19	2.0	19	89	0	58	39	15	10	34	1.82
353742--353885	68	2.1	68	85	5	193	38	13	14	33	1.85
353651--354083	155	2.7	154	80	11	423	38	16	12	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354040--354079	19	2.1	19	85	0	53	40	17	10	32	1.83
354197--354329	67	2.0	66	91	1	212	44	15	9	31	1.77
354362--354401	19	2.1	19	90	0	62	37	17	12	32	1.87
354466--354609	59	2.3	64	83	13	185	36	17	12	33	1.87
354533--357049	81	31.1	85	84	13	3115	37	17	12	32	1.87
354381--354691	142	2.1	147	85	13	430	36	18	12	33	1.88
354753--354791	19	2.1	18	85	4	51	35	17	12	33	1.88
354839--354878	19	2.1	19	85	0	53	35	17	12	35	1.88
354921--354960	19	2.1	19	90	0	62	37	17	12	32	1.87
355007--355046	19	2.1	19	90	0	62	37	17	12	32	1.87
355169--355206	19	2.0	19	89	0	58	39	15	13	31	1.86
356301--356335	18	1.9	18	88	0	52	37	17	14	31	1.89
356378--356414	17	2.1	17	90	5	56	40	16	13	29	1.86
356538--356575	19	2.0	19	89	0	58	39	15	13	31	1.86
356695--356733	18	2.1	18	90	4	60	38	15	12	33	1.85
356780--356819	19	2.1	19	90	0	62	37	17	12	32	1.87
356868--356902	18	1.9	18	88	0	52	37	17	14	31	1.89

Tables:   1   2   3

The End!