Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004114.1 Hibiscus syriacus cultivar Beakdansim tig00009003_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1048340

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 517 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
968434--968587
77
2.0
77
89
0
236
22
16
16
44
1.87
969187--969217
2
15.5
2
93
0
53
45
0
3
51
1.17
972128--972332
54
3.8
54
90
1
313
26
15
21
36
1.94
972128--972332
107
1.9
108
89
1
322
26
15
21
36
1.94
972783--972829
18
2.6
18
96
0
85
34
27
12
25
1.92
1002545--1002692
77
1.9
77
90
2
235
18
12
19
48
1.80
1011997--1012049
20
2.7
20
91
2
90
33
11
7
47
1.68
1015848--1015898
20
2.6
20
90
3
77
33
9
7
49
1.65
1023139--1023205
23
3.2
23
60
27
58
34
17
22
25
1.96
1023135--1023214
39
2.1
39
100
0
160
32
17
23
26
1.97
1023580--1023627
23
2.1
23
84
0
60
35
10
18
35
1.85
1024036--1024105
21
3.2
21
76
11
70
40
22
4
32
1.74
1024041--1024111
23
3.2
22
84
8
90
39
22
4
33
1.74
1024257--1024322
30
2.2
30
82
12
75
42
0
4
53
1.21
1024478--1024539
22
2.7
23
87
5
90
38
19
4
37
1.73
1024468--1024539
23
3.2
23
84
4
92
40
20
4
34
1.72
1023694--1024738
425
2.5
425
97
1
1992
38
12
7
41
1.71
1024958--1025043
39
2.2
39
93
0
145
18
13
18
48
1.80
1025300--1025336
18
2.1
18
89
0
56
51
10
5
32
1.60
1025759--1025861
23
4.5
23
88
2
145
40
19
4
34
1.73
1025759--1025861
46
2.2
46
94
0
179
40
19
4
34
1.73
1028460--1028942
183
2.6
183
97
0
896
34
16
14
34
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1030406--1030480
3
25.0
3
76
0
69
24
34
5
36
1.78
1030410--1030492
12
6.9
12
85
0
103
21
34
7
36
1.81
1030414--1030492
36
2.2
36
93
0
131
21
35
7
35
1.82
1030410--1030495
6
14.3
6
80
0
73
20
34
6
37
1.80
1031955--1032851
197
4.6
197
96
2
1656
32
16
15
36
1.90
1031955--1033004
390
2.7
393
94
4
1823
32
16
14
36
1.90
1033128--1033172
18
2.5
18
88
0
72
55
11
2
31
1.47
1035059--1035123
21
3.1
21
80
6
69
15
29
15
40
1.88
1037313--1037353
21
1.9
22
95
5
75
19
14
12
53
1.72
1037310--1037357
21
2.4
19
83
16
69
18
16
10
54
1.70
1037586--1038027
228
1.9
226
94
0
785
39
7
7
45
1.61
1038700--1038727
6
4.7
6
100
0
56
35
0
0
64
0.94
1042667--1042707
2
20.5
2
100
0
82
48
0
0
51
1.00
1042917--1042952
2
18.0
2
100
0
72
50
0
0
50
1.00
1044208--1044281
38
1.9
38
86
0
103
16
10
12
60
1.58

Tables:   1   2   3   4   5

The End!