genome.fa.s418.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000418.1 Hibiscus syriacus cultivar Beakdansim tig00000765_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  909013

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 524 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
873743--873838	38	2.5	38	91	0	156	25	22	28	23	2.00
873751--873819	21	3.5	21	70	22	67	24	27	26	21	1.99
880219--880260	16	2.6	17	77	7	52	28	2	2	66	1.16
880310--880350	20	2.0	21	90	9	66	73	0	2	24	0.96
881236--881296	23	2.7	24	72	23	60	55	1	0	42	1.09
881641--881691	22	2.3	22	77	12	52	39	7	1	50	1.42
886154--886186	3	11.0	3	100	0	66	66	0	0	33	0.92
887143--887189	22	2.1	22	100	0	94	29	17	14	38	1.89
889373--889469	38	2.4	40	83	8	108	30	19	24	24	1.98
889409--889550	43	3.3	43	80	5	146	30	21	21	26	1.99
889700--889759	21	2.8	22	82	5	77	55	20	5	20	1.62
892620--893106	41	11.9	40	76	10	378	32	20	17	29	1.95
892630--893006	165	2.3	164	86	3	506	32	20	16	30	1.95
892620--893105	82	5.9	81	84	4	473	32	20	17	29	1.96
893811--894179	20	18.5	20	85	4	458	34	26	18	20	1.96
894852--894898	24	2.0	24	87	8	69	25	14	21	38	1.92
895073--895097	12	2.1	12	100	0	50	72	0	28	0	0.86
897400--897706	19	17.4	19	78	17	351	47	17	20	14	1.83
897428--897706	52	5.2	52	89	8	347	47	16	20	15	1.83
897467--897706	71	3.4	71	82	13	348	47	17	20	15	1.82
897400--897738	142	2.4	137	90	6	506	46	17	20	15	1.83
897735--897836	19	5.6	19	85	12	151	14	23	17	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
897949--897985	14	2.6	14	91	0	65	45	21	0	32	1.52
897980--898052	12	6.0	12	67	20	53	57	16	1	24	1.47
897966--898038	38	1.9	38	97	0	137	53	16	1	28	1.51
899903--899959	14	3.7	14	77	20	60	45	22	21	10	1.82
899884--899976	33	2.8	33	95	0	168	47	21	20	10	1.80
899847--899981	19	7.6	19	76	16	128	45	23	19	11	1.82
899977--900105	19	7.3	18	71	17	94	10	17	26	45	1.80
899977--900068	33	2.8	33	90	3	141	9	19	25	45	1.81
900148--900617	93	5.1	93	98	1	912	46	19	12	21	1.82
900148--900617	183	2.5	186	98	1	912	46	19	12	21	1.82
902320--902409	14	5.7	14	74	23	81	42	23	25	8	1.83
902312--902426	33	3.5	33	95	0	212	45	20	24	9	1.81
902319--902431	19	6.8	18	72	23	88	43	22	24	9	1.83
902443--902497	14	3.6	14	73	21	56	9	27	23	40	1.85
902618--902685	33	2.1	33	91	0	109	48	19	22	10	1.78
902865--902919	22	2.5	22	81	0	74	20	16	40	23	1.91
903065--903258	20	9.6	20	82	5	221	19	19	25	35	1.95
903065--903258	60	3.2	60	83	0	253	19	19	25	35	1.95
903251--903327	21	3.7	20	70	13	57	27	16	23	32	1.96
903313--903364	20	2.6	20	96	0	95	21	13	26	38	1.90
903792--903846	26	2.1	27	83	10	69	65	0	5	29	1.15
908865--908910	19	2.3	20	81	7	58	28	28	17	26	1.98

Tables:   1   2   3   4   5

The End!