genome.fa.s4454.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004454.1 Hibiscus syriacus cultivar Beakdansim tig00009796_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  368644

Tables:   1   2   

This is table  2  of  2  ( 195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217145--217188	20	2.2	20	91	0	70	11	13	20	54	1.69
218489--218534	18	2.6	18	92	0	83	28	45	13	13	1.80
219089--219142	20	2.7	20	88	0	81	37	24	24	14	1.93
219086--219187	20	5.5	19	75	14	79	44	20	20	14	1.87
219129--219208	33	2.4	33	95	0	142	47	21	18	12	1.81
219144--219211	14	4.5	15	73	21	61	48	22	17	11	1.79
219212--219361	20	8.2	20	66	18	60	13	18	23	44	1.85
219229--219289	14	4.0	14	76	19	68	9	16	24	49	1.76
219212--219302	33	2.8	33	91	3	139	12	17	21	48	1.80
219715--219783	21	3.3	20	74	6	66	24	40	15	18	1.90
219705--219795	41	2.2	42	86	2	130	21	40	15	21	1.90
219708--219825	42	2.8	41	83	2	110	23	38	16	22	1.93
219757--219825	21	3.3	21	71	2	59	24	34	18	21	1.96
221367--221433	19	3.8	19	81	18	99	49	17	19	13	1.80
221354--221426	33	2.2	33	95	0	128	47	19	20	12	1.81
221440--221492	20	2.7	20	97	2	99	15	20	16	47	1.83
221497--221545	20	2.5	20	93	0	80	14	24	26	34	1.94
223976--224029	24	2.2	24	90	0	81	40	20	16	22	1.91
224739--224834	20	4.7	21	72	12	74	19	18	23	37	1.94
224759--224833	20	3.7	20	77	10	80	20	18	25	36	1.95
224739--224836	41	2.4	41	91	0	160	19	18	23	38	1.93
224739--224854	41	2.8	41	85	2	108	20	19	22	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224865--224915	21	2.4	22	74	6	52	37	19	25	17	1.94
226910--226950	2	20.5	2	84	0	55	41	0	7	51	1.30
229005--229030	11	2.4	11	100	0	52	38	0	0	61	0.96
235604--235671	3	23.0	3	93	3	120	67	0	0	32	0.91
240897--240926	2	15.0	2	100	0	60	50	0	0	50	1.00
242053--242082	15	2.0	15	100	0	60	20	20	20	40	1.92
249818--249847	3	10.0	3	92	0	51	33	3	0	63	1.11
250544--250628	44	1.9	43	81	9	100	45	1	1	51	1.16
250768--250809	21	2.0	21	86	9	59	50	0	2	47	1.14
251870--251986	60	2.0	60	81	3	137	36	19	16	27	1.93
255008--255174	60	2.8	60	81	2	185	38	3	22	34	1.72
255021--255174	59	2.6	60	81	3	186	40	3	21	34	1.72
260324--260385	24	2.6	24	100	0	124	30	16	3	50	1.61
265858--265913	2	28.0	2	100	0	112	50	0	0	50	1.00
269798--269831	15	2.3	15	94	0	59	38	20	14	26	1.91
273905--274001	41	2.3	41	89	3	140	48	8	15	27	1.73
277590--277701	55	2.0	55	89	0	170	45	20	9	24	1.81
281037--281200	6	27.3	6	93	0	265	29	16	4	50	1.64
281239--281288	20	2.5	20	83	6	57	34	2	14	50	1.54
281250--281288	19	2.1	19	85	9	53	33	0	15	51	1.44
287101--287125	9	2.8	9	100	0	50	80	8	0	12	0.92
287110--287169	27	2.2	28	78	3	68	63	10	3	23	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287661--287749	21	4.2	21	76	0	88	25	17	29	26	1.98
287768--287807	21	1.9	21	89	0	62	17	20	30	32	1.95
290681--290898	117	1.9	118	91	2	359	25	15	20	38	1.91
305496--305546	2	25.5	2	100	0	102	49	0	0	50	1.00
306680--306765	29	2.8	30	74	13	86	44	10	5	39	1.63
306867--306938	31	2.4	30	84	9	94	43	13	8	34	1.75
306847--306975	60	2.2	59	81	12	140	41	12	10	35	1.78
321202--321230	2	14.5	2	100	0	58	0	48	0	51	1.00
323787--323818	2	16.0	2	100	0	64	50	0	0	50	1.00
325011--325035	3	8.3	3	100	0	50	36	0	32	32	1.58
331570--331703	60	2.2	60	82	10	150	37	15	11	35	1.85
332293--332341	3	16.3	3	91	0	80	30	2	2	65	1.15
332789--332838	25	2.0	25	96	0	91	26	28	14	32	1.94
335268--335345	37	2.1	37	97	0	147	44	16	0	38	1.48
341846--341976	42	3.1	42	92	0	208	28	37	22	12	1.90
343873--343918	2	23.0	2	95	0	83	52	0	0	47	1.00
344069--344121	21	2.5	21	90	0	88	30	30	20	18	1.97
344132--344265	21	6.4	21	87	8	202	19	21	26	32	1.97
344132--344265	41	3.2	42	89	7	202	19	21	26	32	1.97
344143--344281	42	3.3	42	91	5	185	20	21	23	34	1.97
344215--344281	21	3.2	21	71	23	68	20	19	20	38	1.93
345522--345649	64	2.0	67	89	7	201	34	19	18	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346943--347096	31	5.0	31	95	1	265	38	22	18	19	1.93
351331--351453	31	4.0	31	93	2	203	38	21	19	20	1.94
352863--353074	103	2.1	103	95	0	388	25	12	25	37	1.91
353093--353144	23	2.3	23	89	0	77	19	28	26	25	1.98
353093--353155	23	2.7	23	78	4	65	20	25	25	28	1.99
357036--357164	42	3.0	42	82	8	136	28	33	25	12	1.92
359073--359125	26	2.1	26	92	3	90	33	3	0	62	1.13
364629--364668	21	1.9	21	84	0	53	22	25	45	7	1.78
368519--368582	31	2.1	31	87	0	92	57	6	18	17	1.60

Tables:   1   2

The End!