genome.fa.s4507.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004507.1 Hibiscus syriacus cultivar Beakdansim tig00009942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1776135

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 904 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1590112--1590161	23	2.2	23	92	0	82	16	22	14	48	1.81
1599103--1599137	17	1.9	17	88	11	52	42	0	2	54	1.15
1599216--1599272	18	3.0	19	79	7	62	50	1	0	47	1.11
1605314--1605358	23	1.9	24	90	4	74	51	0	0	48	1.00
1605663--1605688	6	4.3	6	100	0	52	69	0	0	30	0.89
1605929--1606099	58	2.9	55	77	10	155	46	3	15	34	1.63
1612981--1613041	31	2.0	31	90	3	97	27	16	9	45	1.79
1615969--1616001	17	1.9	17	100	0	66	48	9	12	30	1.71
1622702--1622749	24	2.0	24	100	0	96	37	16	8	37	1.79
1645289--1645313	13	1.9	13	100	0	50	64	12	16	8	1.49
1645475--1645521	3	15.7	3	100	0	94	34	0	0	65	0.93
1646019--1646051	17	1.9	17	100	0	66	78	3	18	0	0.87
1658299--1658372	1	74.0	1	75	0	67	87	0	12	0	0.53
1658299--1658372	10	7.3	10	85	8	105	87	0	12	0	0.53
1658297--1658373	18	4.4	18	81	15	99	85	0	14	0	0.59
1659424--1660208	83	9.5	83	94	2	1244	27	13	22	36	1.92
1660940--1661281	112	3.0	112	95	0	603	36	13	20	29	1.90
1661214--1661346	65	2.0	65	94	0	230	37	12	18	31	1.88
1661101--1661976	178	4.9	178	97	0	1571	36	12	19	31	1.89
1661392--1661524	65	2.0	65	98	0	257	37	12	18	30	1.89
1661570--1661702	65	2.0	65	98	0	257	37	12	18	30	1.89
1661748--1661877	62	2.0	62	91	4	206	36	13	16	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1661820--1662075	114	2.2	114	88	2	381	39	10	19	30	1.84
1662326--1662393	3	22.7	3	96	0	127	33	1	0	64	1.02
1662891--1662923	17	1.9	17	100	0	66	78	3	18	0	0.87
1670290--1670393	45	2.3	45	86	5	138	30	21	18	29	1.97
1670381--1670432	19	2.7	19	96	0	95	23	17	28	30	1.97
1671983--1672053	30	2.5	28	82	14	83	52	2	5	39	1.40
1671996--1672060	30	2.2	30	100	0	130	52	3	7	36	1.46
1671503--1672588	555	2.0	554	97	0	2050	45	11	11	32	1.75
1675985--1676034	24	2.1	24	100	0	100	20	20	14	46	1.84
1676263--1676300	20	1.9	20	100	0	76	50	13	10	26	1.73
1680365--1680434	34	2.1	34	97	0	131	34	24	20	21	1.97
1693048--1693088	20	2.0	20	100	0	82	19	9	14	56	1.66
1700883--1700915	14	2.4	14	94	0	57	39	9	6	45	1.61
1701051--1701090	20	2.2	20	86	13	59	40	0	2	57	1.12
1701182--1701252	19	3.7	20	74	10	67	46	2	1	49	1.25
1701206--1701262	27	2.2	26	82	14	66	50	3	0	45	1.18
1701371--1701417	22	2.1	23	88	4	69	53	0	2	44	1.12
1701379--1701422	22	2.0	22	82	8	54	54	0	2	43	1.12
1701339--1701483	53	2.7	54	77	15	133	48	0	2	49	1.12
1701436--1701481	24	1.9	23	83	16	58	50	0	2	47	1.13
1708678--1708718	15	2.7	15	96	0	73	7	46	0	46	1.30
1713937--1713971	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1716373--1716418	12	3.6	12	81	16	56	45	17	19	17	1.85
1716379--1716419	12	3.1	13	80	19	57	46	14	17	21	1.84
1718698--1718737	21	1.9	21	94	0	71	30	15	7	47	1.72
1718732--1718830	33	3.0	33	94	1	164	32	7	15	45	1.73
1718841--1718870	13	2.3	13	94	0	51	43	3	6	46	1.46
1719265--1719318	15	3.6	15	92	0	90	27	12	12	46	1.79
1719409--1719440	16	2.0	17	88	11	50	43	21	21	12	1.86
1723204--1723260	27	2.1	27	96	0	105	43	8	14	33	1.76
1728323--1728353	15	2.1	15	93	0	53	54	0	0	45	0.99
1746788--1746828	13	3.2	13	80	13	50	46	19	0	34	1.50
1747140--1747177	20	1.9	20	94	0	67	26	23	18	31	1.97
1747185--1747345	64	2.5	63	83	6	189	24	24	18	32	1.97
1755063--1755092	6	5.0	6	100	0	60	0	50	16	33	1.46
1755118--1755191	36	2.1	36	97	0	139	13	28	22	35	1.92
1761214--1761272	31	1.9	31	89	0	91	44	3	8	44	1.51
1761298--1761943	22	29.5	22	88	2	942	48	10	0	40	1.41
1762315--1762372	3	19.3	3	92	0	71	41	1	0	56	1.09
1764506--1764556	18	2.8	18	82	5	59	25	0	1	72	0.95
1775180--1775243	1	64.0	1	74	0	56	87	1	10	0	0.61
1775180--1775241	11	5.5	11	84	7	81	87	1	11	0	0.62

Tables:   1   2   3   4   5   6   7   8

The End!