genome.fa.s4986.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004986.1 Hibiscus syriacus cultivar Beakdansim tig00011186_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  428355

Tables:   1   2   

This is table  2  of  2  ( 187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205757--205807	22	2.3	22	96	0	93	7	17	37	37	1.79
205887--205928	9	5.0	8	81	18	50	59	2	0	38	1.10
206206--206472	131	2.0	131	84	3	351	24	15	32	26	1.95
206222--206419	43	4.5	42	67	15	116	24	15	32	27	1.96
206778--206891	36	3.1	36	83	2	147	36	15	17	29	1.91
208072--208114	19	2.3	18	84	8	50	6	9	6	76	1.15
216146--216203	21	2.8	21	73	2	55	32	34	18	13	1.91
217933--217966	17	2.0	17	88	0	50	14	2	29	52	1.56
221001--221106	30	3.5	30	78	1	104	56	7	14	21	1.62
222654--222705	3	17.7	3	76	11	54	59	1	3	34	1.27
223403--223453	22	2.3	22	96	0	93	31	17	13	37	1.89
224973--225119	17	8.5	17	72	11	102	36	16	9	38	1.81
227682--229429	440	4.0	439	94	0	2998	40	14	13	32	1.84
230534--230615	35	2.3	35	79	8	94	32	2	10	53	1.49
231948--232427	241	2.0	241	97	2	923	44	7	15	33	1.74
232638--232700	21	3.0	20	76	15	74	46	3	0	50	1.17
232711--232750	9	4.4	9	90	0	62	60	0	0	40	0.97
232703--232752	9	5.7	9	86	11	59	60	0	0	40	0.97
232872--232908	18	2.0	19	94	5	67	54	0	21	24	1.45
233376--233555	35	5.1	35	80	6	184	25	18	23	32	1.97
233830--233871	2	22.0	2	85	9	61	45	0	2	52	1.13
236014--236153	17	8.1	17	69	17	67	38	10	14	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236025--236153	34	3.8	33	72	11	98	38	10	14	36	1.80
240511--240577	17	3.9	17	77	11	66	35	7	14	41	1.75
240648--240688	17	2.4	17	95	0	73	26	17	17	39	1.91
244621--244688	34	2.0	34	85	5	93	39	8	10	41	1.70
244622--244689	17	3.9	18	79	7	70	41	8	8	41	1.67
246482--246523	22	1.9	22	100	0	84	28	14	14	42	1.84
247013--247082	17	4.1	17	83	0	77	40	8	10	41	1.69
247139--247180	17	2.5	17	84	0	57	42	11	14	30	1.81
257022--257075	21	2.4	22	75	9	56	74	11	14	0	1.08
278440--278825	191	2.0	191	97	2	731	36	17	15	30	1.91
279809--279955	73	2.0	73	100	0	294	33	16	25	24	1.96
283404--284499	380	2.9	379	84	4	1328	25	25	17	31	1.97
308808--308873	32	2.1	32	97	0	123	36	13	27	22	1.92
311421--311445	11	2.3	11	100	0	50	44	16	8	32	1.76
314083--314165	42	2.0	42	85	4	114	7	39	8	44	1.62
315260--315361	41	2.5	41	79	3	116	31	12	26	29	1.93
315330--315436	34	3.1	34	76	0	88	36	13	16	33	1.88
327405--328507	382	2.9	379	85	4	1366	25	25	17	31	1.97
352819--352884	32	2.1	32	97	0	123	36	13	27	22	1.92
355378--355402	11	2.3	11	100	0	50	44	16	8	32	1.76
357426--357508	42	2.0	43	97	2	159	43	7	14	34	1.73
358043--358125	42	2.0	42	85	4	114	7	39	8	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359276--359379	34	3.2	33	75	4	111	35	13	17	33	1.89
372801--372831	14	2.2	14	100	0	62	41	22	19	16	1.89
373451--373494	23	1.9	23	81	9	54	29	4	18	47	1.68
374067--374110	23	1.9	23	85	0	61	22	18	22	36	1.95
374388--374489	2	51.0	2	100	0	204	50	0	0	50	1.00
376305--376347	2	22.5	2	88	9	63	46	0	2	51	1.13
380128--380236	44	2.5	44	79	11	116	33	18	15	33	1.92
380573--380611	10	3.6	10	81	18	51	79	0	10	10	0.94
380573--380620	13	4.0	12	82	12	55	77	0	10	12	1.00
380568--380636	23	3.0	23	81	12	79	69	0	14	15	1.19
380866--380921	26	2.1	27	86	3	78	39	8	12	39	1.75
380893--381060	74	2.4	71	85	6	207	35	7	16	40	1.77
381033--381158	26	4.7	27	72	10	107	36	10	17	35	1.84
381019--381269	80	3.1	79	87	4	342	36	8	16	39	1.79
381036--381289	82	3.1	81	85	5	327	35	7	16	39	1.78
382885--383200	137	2.3	136	84	6	379	29	13	13	43	1.82
392601--392625	2	12.5	2	100	0	50	52	0	0	48	1.00
410862--411363	54	9.3	54	83	2	508	31	19	14	33	1.93
410862--411363	108	4.6	108	82	3	571	31	19	14	33	1.93
410915--411358	162	2.7	163	85	2	563	32	19	14	34	1.92
411782--411836	20	2.8	19	81	8	56	20	23	12	43	1.86
416020--416187	48	3.5	48	90	0	264	25	13	27	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416593--416630	16	2.4	16	86	4	51	28	0	5	65	1.14

Tables:   1   2

The End!