genome.fa.s499.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000499.1 Hibiscus syriacus cultivar Beakdansim tig00000951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  585273

Tables:   1   2   

This is table  2  of  2  ( 195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415586--416198	310	2.0	310	89	1	944	29	25	7	37	1.84
415896--425743	688	14.3	689	88	1	14146	30	20	11	37	1.88
427486--427525	8	4.9	8	85	14	55	77	2	20	0	0.88
431963--445341	688	19.5	689	89	1	19533	30	20	11	38	1.88
444541--446248	573	3.0	569	76	10	1898	29	21	10	38	1.87
445681--448853	688	4.6	689	87	2	4580	29	20	11	37	1.89
448357--449401	548	1.9	549	89	1	1635	29	19	13	37	1.90
448910--453155	685	6.2	686	87	3	6070	30	20	11	37	1.89
452539--453763	608	2.0	609	88	2	1809	29	20	11	38	1.88
453145--457155	681	5.9	686	88	3	5705	30	20	11	36	1.89
457146--461154	683	5.9	687	87	3	5559	30	20	11	36	1.89
457148--461154	679	5.9	681	87	4	5437	30	20	11	36	1.89
460543--461758	604	2.0	605	86	3	1720	30	20	11	38	1.87
461147--468188	674	10.4	684	85	5	9394	30	20	12	36	1.89
469905--469956	13	4.2	12	79	20	63	78	1	19	0	0.84
469900--469947	8	5.9	8	88	11	71	77	2	20	0	0.88
469900--469954	5	10.8	5	78	21	53	78	1	20	0	0.85
469899--469960	8	8.0	8	81	13	58	79	1	19	0	0.82
474305--491573	687	25.5	688	87	4	23820	30	20	11	38	1.88
491915--495105	688	4.7	688	89	1	4766	29	20	11	37	1.89
495142--499411	688	6.3	687	88	2	6144	30	20	11	37	1.89
499404--503446	687	5.9	689	89	1	6029	30	20	11	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503439--507821	688	6.4	689	89	1	6586	30	21	11	37	1.89
507861--509308	688	2.1	687	90	2	2240	31	20	11	36	1.89
510142--510399	89	2.9	89	95	1	457	44	6	10	37	1.66
511084--511245	75	2.2	75	85	2	209	27	23	16	32	1.96
511234--511284	20	2.5	20	93	0	84	25	21	17	35	1.95
512322--512413	18	5.4	17	65	27	52	26	19	20	33	1.96
512305--512423	34	3.5	34	95	0	211	26	20	19	33	1.96
516046--516186	67	2.1	67	82	0	165	41	10	4	42	1.61
534859--535158	45	7.4	42	68	22	153	33	14	25	27	1.94
534908--535205	34	7.8	34	70	22	191	34	12	24	28	1.92
534849--535214	79	4.6	79	93	0	606	34	13	24	27	1.92
535609--535796	68	2.8	68	85	0	259	31	12	26	29	1.93
535802--535906	29	3.6	28	89	5	156	44	11	23	20	1.83
541327--541379	3	18.3	3	78	7	56	58	1	1	37	1.20
541340--541386	14	3.3	15	85	5	62	57	0	2	40	1.11
541327--541379	20	2.6	20	87	3	70	58	1	1	37	1.20
541555--542024	53	8.9	53	83	1	577	21	26	19	32	1.97
541535--542024	159	3.1	159	84	3	666	22	26	19	31	1.98
542543--542624	42	2.0	41	85	2	110	35	20	15	28	1.94
542654--542747	42	2.2	42	83	3	109	32	22	17	27	1.96
542671--542753	42	2.0	42	92	0	139	28	24	21	25	1.99
542761--542886	37	3.4	37	80	1	153	25	19	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545887--545934	21	2.2	21	85	10	62	22	27	22	27	1.99
546619--546852	31	7.5	31	93	0	387	40	21	17	20	1.91
554040--554089	3	17.3	3	79	8	59	60	0	2	38	1.09
554051--554089	20	2.0	20	94	0	69	58	0	2	38	1.12
555777--556076	79	3.8	79	86	3	415	36	13	23	26	1.92
555915--556054	34	3.8	34	72	18	118	33	12	25	27	1.93
556458--556672	68	3.2	68	92	0	358	29	16	24	30	1.96
556458--556710	136	1.9	136	86	0	344	30	15	23	30	1.95
556709--556855	29	5.0	29	92	1	222	44	10	22	22	1.84
558863--558892	2	15.0	2	100	0	60	50	0	0	50	1.00
560745--560780	18	2.0	18	89	10	56	38	16	22	22	1.93
561274--561361	45	2.0	45	95	0	158	30	13	28	27	1.94
561298--561552	79	3.2	79	87	3	352	34	13	23	28	1.93
561501--561586	34	2.5	34	94	0	145	33	13	23	29	1.93
561974--562159	68	2.7	68	89	1	266	31	16	24	27	1.97
562153--562271	29	4.1	29	91	0	184	47	10	22	20	1.80
564252--564287	4	9.0	4	100	0	72	25	0	25	50	1.50
564615--564661	19	2.6	18	75	18	53	46	0	4	48	1.21
568197--568285	45	1.9	47	93	4	155	28	11	23	37	1.89
577864--577911	17	2.9	17	87	9	64	75	0	18	6	1.01
577886--577946	28	2.2	28	85	5	79	75	1	16	6	1.09
577895--577978	27	3.0	26	81	8	87	72	1	20	5	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577931--577980	20	2.5	20	75	18	59	70	0	22	8	1.13
579162--579416	51	5.0	50	87	7	359	29	13	29	27	1.94
579175--579521	106	3.3	105	83	9	422	30	15	27	27	1.96
579166--579521	55	6.8	51	84	10	353	30	14	26	27	1.95
579165--579466	155	1.9	155	87	2	446	29	14	27	27	1.95
580185--580226	3	14.0	3	100	0	84	33	0	0	66	0.92
582197--582343	72	2.0	72	86	2	206	36	8	9	45	1.67
584088--584125	6	6.7	6	91	8	62	73	0	15	10	1.09
584088--584125	11	3.4	11	92	7	67	73	0	15	10	1.09

Tables:   1   2

The End!