genome.fa.s5189.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005189.1 Hibiscus syriacus cultivar Beakdansim tig00011718_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1183632

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 686 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630409--630449	15	2.7	15	84	0	55	7	17	0	75	1.02
633216--633286	31	2.3	31	95	4	126	26	23	12	36	1.91
634044--634127	30	2.7	31	83	7	98	51	0	0	48	1.00
634079--634127	25	2.0	25	87	0	71	51	0	0	48	1.00
634055--634123	15	4.6	14	72	16	50	52	0	0	47	1.00
638374--638406	4	8.2	4	100	0	66	24	0	0	75	0.80
651821--651983	48	3.4	48	93	0	281	27	20	23	28	1.99
655948--656047	42	2.4	42	94	0	173	26	39	12	23	1.89
658334--658363	5	6.0	5	96	0	51	0	23	0	76	0.78
669066--669168	38	2.7	39	84	1	136	24	6	9	59	1.53
669066--669180	38	3.0	36	77	14	115	25	7	9	57	1.57
670227--670361	60	2.2	60	83	7	175	32	20	19	28	1.96
670713--670737	7	3.6	7	100	0	50	28	0	0	72	0.86
673387--673497	53	2.1	53	100	0	222	23	11	32	32	1.91
673393--673475	26	3.2	26	61	16	62	25	12	33	28	1.92
675660--675685	2	13.0	2	100	0	52	50	0	0	50	1.00
676304--676362	8	7.8	8	74	24	56	30	0	1	67	1.00
676300--676370	29	2.4	29	80	0	88	28	0	1	70	0.96
676307--676371	16	4.2	16	74	18	66	29	0	1	69	0.98
676619--676678	13	4.8	13	78	15	72	71	1	0	26	0.95
676614--676658	21	2.1	21	91	0	72	75	0	0	24	0.80
676614--676674	16	4.0	16	77	12	56	72	1	0	26	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676614--676666	21	2.5	21	87	0	70	73	1	0	24	0.93
676614--676678	21	3.3	20	73	20	66	72	1	0	26	0.94
677185--677262	29	2.7	28	82	11	79	43	10	6	39	1.64
677639--677683	2	23.0	2	95	4	83	51	0	0	48	1.00
683010--683187	95	1.8	98	86	5	265	30	9	15	44	1.79
686267--686381	42	2.7	43	94	4	198	16	19	19	45	1.86
686550--686601	22	2.4	21	83	6	59	50	0	0	50	1.00
686899--686968	20	3.5	20	96	0	122	35	12	10	41	1.77
686951--687037	15	5.9	15	79	2	86	34	17	5	42	1.73
686899--686977	40	2.0	40	87	0	113	35	13	8	41	1.76
686967--687032	15	4.4	15	84	0	96	39	18	4	37	1.71
686951--687032	30	2.8	30	87	5	105	36	17	6	40	1.74
697734--697763	16	1.9	15	93	6	51	23	0	6	70	1.11
703088--703131	21	2.1	21	87	8	63	54	2	9	34	1.44
703385--703417	14	2.3	15	89	5	50	30	3	0	66	1.06
710908--710965	27	2.1	28	90	3	91	58	1	1	37	1.18
710918--710976	27	2.1	27	81	9	66	59	5	5	30	1.41
711655--711688	13	2.8	12	86	4	50	70	0	29	0	0.87
711655--711688	6	5.5	6	86	6	50	70	0	29	0	0.87
712409--712446	2	19.0	2	100	0	76	50	0	0	50	1.00
713943--713988	20	2.2	21	84	3	58	43	0	2	54	1.12
719467--719536	28	2.5	28	100	0	140	35	11	15	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719577--719707	35	3.7	35	95	0	235	32	15	21	30	1.94
721374--721440	29	2.3	29	81	0	89	37	4	22	35	1.75
722716--722837	40	3.0	40	97	0	235	23	17	26	32	1.96
722976--723106	51	2.7	48	82	10	165	38	7	20	32	1.81
723499--723557	30	2.0	30	89	0	91	22	15	28	33	1.94
725248--725285	20	2.0	19	85	10	51	34	7	21	36	1.82
726587--726654	31	2.2	32	89	2	102	36	5	7	50	1.55
727779--727971	48	4.0	48	81	1	208	27	40	14	17	1.89
727865--727947	24	3.5	24	68	6	69	26	42	15	15	1.87
727791--727971	96	1.9	96	85	0	254	27	40	13	18	1.87
728770--728845	24	3.2	23	71	14	64	27	38	13	21	1.90
729448--729523	24	3.2	24	73	14	84	30	39	9	21	1.84
727938--729569	48	34.0	48	83	4	1525	26	37	13	22	1.91
729845--729887	18	2.4	18	88	0	68	37	55	2	4	1.33
731088--731134	23	2.0	24	91	4	78	46	4	8	40	1.54
731089--731151	23	2.8	22	83	13	67	46	3	7	42	1.49
731225--731262	18	2.1	18	100	0	76	31	0	13	55	1.38
731946--731996	20	2.5	21	90	9	88	33	3	21	41	1.72
733084--733207	48	2.6	48	78	11	130	27	35	12	24	1.92
733341--733579	48	5.0	48	77	5	232	27	38	12	20	1.89
733329--733506	96	1.9	96	87	0	266	28	38	14	18	1.90
733419--733495	24	3.2	24	67	10	68	29	40	10	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733341--733579	96	2.5	96	81	6	261	27	38	12	20	1.89
737251--737328	17	4.4	17	88	4	111	23	24	29	23	1.99
744310--744691	207	1.9	204	91	1	629	30	12	29	28	1.92
744649--744712	24	2.7	23	82	4	65	20	6	32	40	1.77
747911--747943	16	2.2	15	89	10	50	63	0	0	36	0.95
750632--750672	12	3.5	11	87	12	55	24	17	9	48	1.76
752720--752753	16	2.1	16	94	0	59	32	8	26	32	1.87
754442--754467	12	2.2	12	100	0	52	42	7	42	7	1.62
758466--758503	20	1.9	20	88	0	58	50	21	15	13	1.78
758767--758810	22	2.0	22	90	0	70	20	15	43	20	1.88
759002--759050	20	2.5	20	90	6	73	26	18	30	24	1.98
759036--759136	20	4.9	21	71	12	59	18	19	18	42	1.89
758978--759092	20	5.7	20	74	5	70	24	16	23	35	1.95
759020--759154	41	3.3	41	82	4	139	19	21	20	38	1.94
759081--759173	20	4.6	20	78	4	96	17	24	18	39	1.91
759081--759173	41	2.3	41	100	0	186	17	24	18	39	1.91
763868--763919	24	2.2	24	89	0	77	32	1	46	19	1.61
768197--768494	150	2.0	148	98	1	569	28	19	19	32	1.96
769150--769195	24	2.0	24	91	4	76	32	0	45	21	1.52
770679--772384	110	15.7	108	84	6	2027	25	14	17	41	1.88
772318--772455	71	2.0	66	90	6	213	23	18	15	43	1.87
772207--772565	177	2.0	181	87	4	523	25	15	16	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
772384--773832	109	13.3	109	89	4	2029	25	14	18	41	1.89
778886--780106	110	11.1	110	87	3	1612	25	14	18	42	1.88
778886--780106	439	2.8	435	88	4	1806	25	14	18	42	1.88
780493--780595	24	4.3	24	93	2	154	22	18	34	24	1.96
780533--780597	12	5.4	12	73	26	66	23	15	36	24	1.93
780744--780789	24	1.9	24	90	0	74	10	15	41	32	1.82
780872--780917	24	1.9	24	86	0	65	15	6	41	36	1.73
783221--783271	24	2.1	24	96	0	93	27	41	9	21	1.84
784211--784261	25	2.0	26	85	11	70	37	3	5	52	1.44
786402--786426	12	2.1	12	100	0	50	28	24	8	40	1.83
791839--791897	31	1.9	30	83	10	75	25	6	8	59	1.51
805090--805114	11	2.3	11	100	0	50	16	28	0	56	1.41
806313--806633	159	2.0	159	100	0	642	25	20	23	30	1.99
809720--809763	19	2.3	19	92	7	72	43	0	2	54	1.12
811350--811421	35	2.1	35	94	0	126	22	30	8	38	1.83
818673--818891	105	2.1	105	91	1	350	42	9	23	24	1.83
831299--831388	28	3.1	30	77	9	78	38	10	6	44	1.64
831331--831388	28	2.1	28	86	0	80	41	13	6	37	1.72
834192--834242	25	2.0	25	100	0	102	45	27	0	27	1.54
835706--835740	3	11.7	3	93	0	61	65	0	0	34	0.93
842161--842218	23	2.5	23	71	0	62	53	13	22	10	1.70
843277--843371	43	2.2	43	96	3	174	36	35	10	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
843491--843606	24	4.8	24	88	4	126	41	19	15	23	1.90
843491--843606	48	2.4	48	85	2	144	41	19	15	23	1.90
843516--843624	24	4.5	24	85	6	87	43	18	14	23	1.87
843522--843624	48	2.1	48	82	3	118	43	18	14	23	1.87
848409--848503	43	2.2	43	96	0	172	37	36	9	15	1.80
848605--848680	24	3.2	24	84	0	62	43	17	10	28	1.82
848620--848737	24	4.9	24	87	4	157	40	18	14	26	1.89
848620--848755	72	1.9	72	81	6	168	41	18	13	25	1.88
856651--856731	39	2.1	39	81	9	94	34	19	18	27	1.95
859541--859585	21	2.1	21	84	8	56	20	20	28	31	1.97

Tables:   1   2   3   4   5   6