genome.fa.s5189.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005189.1 Hibiscus syriacus cultivar Beakdansim tig00011718_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1183632

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 686 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1077709--1077881	33	4.8	38	82	5	159	10	18	23	46	1.81
1079802--1079837	14	2.6	14	95	0	63	33	0	22	44	1.53
1079944--1080027	19	4.4	19	98	1	159	46	16	21	15	1.84
1080036--1080238	19	11.7	19	74	20	203	14	21	18	45	1.85
1080036--1080210	52	3.3	52	97	0	323	14	22	17	45	1.85
1080042--1080252	33	6.2	33	76	14	223	13	21	18	45	1.84
1082534--1082558	12	2.1	12	100	0	50	0	28	0	72	0.86
1082733--1082779	24	2.0	24	87	8	69	38	21	14	25	1.92
1083461--1083710	20	12.5	20	87	1	252	18	18	25	37	1.93
1083697--1083779	21	4.0	21	75	6	78	25	15	24	34	1.95
1083677--1083775	42	2.4	43	77	11	100	21	17	23	38	1.93
1084138--1084212	36	2.1	36	85	9	100	48	1	4	46	1.29
1092196--1092260	21	3.1	21	90	0	103	24	26	24	24	2.00
1095168--1095234	34	2.0	34	96	0	125	35	11	14	37	1.84
1095168--1095221	17	3.2	17	67	27	51	35	11	12	40	1.79
1096461--1096487	3	9.0	3	100	0	54	66	0	33	0	0.92
1103756--1103902	70	2.1	71	93	1	251	27	20	20	31	1.97
1106329--1106382	22	2.5	22	87	0	81	16	16	44	22	1.86
1106487--1106525	20	2.0	20	100	0	78	17	20	25	35	1.95
1106607--1106660	20	2.7	21	82	8	76	24	12	33	29	1.92
1107027--1107067	21	2.0	21	85	0	55	53	24	12	9	1.68
1107248--1107278	15	2.1	15	93	0	53	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1109784--1109814	14	2.1	15	94	5	55	48	0	0	51	1.00
1109910--1109935	2	13.0	2	100	0	52	50	0	0	50	1.00
1110291--1110329	2	19.5	2	100	0	78	48	0	0	51	1.00
1111866--1111905	2	20.0	2	100	0	80	50	0	0	50	1.00
1113334--1113364	15	2.1	15	93	0	53	16	12	25	45	1.83
1113349--1113654	42	7.4	41	78	6	188	28	18	18	34	1.95
1113413--1113631	82	2.7	81	88	2	312	29	20	17	32	1.95
1113387--1113669	124	2.3	124	82	7	333	27	19	18	34	1.95
1117536--1117904	43	8.6	42	85	2	389	23	22	20	33	1.98
1117536--1117873	85	4.0	85	86	4	441	23	22	20	32	1.98
1117536--1117904	86	4.3	85	86	2	465	23	22	20	33	1.98
1118824--1118884	32	1.9	32	96	0	113	31	11	9	47	1.72
1122234--1122281	8	6.0	8	77	0	51	33	4	14	47	1.63
1122236--1122278	12	3.6	12	74	0	50	32	4	13	48	1.63
1125902--1126016	20	5.6	21	73	7	76	30	27	17	24	1.97
1126004--1126156	20	7.7	20	88	3	75	33	27	19	18	1.96
1126004--1126155	40	3.8	40	88	1	135	33	27	19	19	1.96
1126004--1126156	60	2.6	59	86	3	207	33	27	19	18	1.96
1126536--1126606	33	2.2	33	94	0	124	11	23	16	47	1.79
1126686--1126792	21	5.6	20	73	17	102	46	18	21	13	1.83
1126747--1126803	14	3.7	14	75	20	60	43	22	24	8	1.81
1126740--1126819	33	2.4	33	95	0	142	48	21	21	8	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1126815--1126942	19	7.1	19	70	19	78	11	24	18	45	1.83
1126837--1126893	14	3.7	14	70	20	51	10	22	22	43	1.84
1126820--1126942	33	3.5	33	85	10	156	11	23	18	46	1.81
1126878--1126942	21	3.1	21	82	4	96	10	26	15	47	1.78
1126877--1126940	20	3.2	20	82	4	92	12	25	15	46	1.81
1128626--1129034	93	4.4	93	99	0	809	22	13	19	45	1.84
1129150--1129206	14	3.7	14	72	20	51	43	24	22	8	1.81
1129164--1129255	19	5.4	18	72	24	65	46	28	17	7	1.75
1129132--1129255	33	3.7	33	91	1	185	45	27	17	8	1.78
1129181--1129239	14	3.9	14	76	20	64	47	28	16	6	1.72
1129251--1129423	19	9.6	19	76	12	150	9	19	25	45	1.80
1129273--1129329	14	3.7	14	72	20	51	7	21	28	43	1.78
1129287--1129423	57	2.5	54	88	7	188	8	18	27	45	1.78
1129251--1129423	33	4.8	37	81	7	164	9	19	25	45	1.80
1129876--1129942	21	3.2	21	70	6	64	26	34	19	19	1.96
1131345--1131380	14	2.6	14	95	0	63	33	0	22	44	1.53
1131471--1131558	19	4.8	19	81	14	114	48	15	21	13	1.80
1131471--1131577	53	2.0	53	96	1	198	46	16	23	13	1.82
1131567--1131756	19	10.7	19	78	18	221	14	22	17	45	1.84
1131611--1131665	14	3.6	14	73	21	56	10	23	20	45	1.82
1131567--1131770	105	1.9	105	95	0	372	13	22	18	45	1.84
1131591--1131770	33	5.2	33	86	8	261	12	22	18	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1134252--1134298	24	2.0	24	87	8	69	38	21	14	25	1.92
1134991--1135239	20	12.4	20	84	5	261	19	18	26	36	1.94
1135207--1135303	20	4.8	20	80	3	95	24	18	21	35	1.96
1146729--1146766	12	2.9	13	80	11	51	55	0	5	39	1.23
1150935--1150972	20	1.9	20	100	0	76	44	26	18	10	1.82
1151215--1151307	20	4.7	20	75	2	98	39	18	18	23	1.92
1151212--1151307	40	2.4	40	89	0	156	40	17	17	23	1.91
1151279--1151569	146	2.0	146	92	1	485	35	19	17	27	1.94
1158692--1158801	31	3.3	31	67	16	94	49	12	12	25	1.76
1161192--1161220	7	4.1	7	100	0	58	72	0	0	27	0.85
1164068--1164153	24	3.6	24	79	14	106	51	11	11	25	1.72
1164959--1164989	16	1.9	16	100	0	62	58	3	25	12	1.50
1165347--1165380	7	5.1	7	92	7	54	85	0	0	14	0.60
1165350--1165379	6	4.8	6	92	8	51	86	0	0	13	0.57
1165350--1165379	13	2.4	12	94	5	51	86	0	0	13	0.57
1169132--1169190	29	2.0	29	100	0	118	23	13	13	49	1.78
1173756--1173813	29	2.0	29	100	0	116	24	13	13	48	1.79
1174439--1174504	25	2.6	26	83	13	93	25	21	9	43	1.81
1174556--1174631	2	39.5	2	84	7	104	50	3	0	46	1.20
1175091--1175247	85	1.8	85	91	2	262	33	12	7	45	1.71

Tables:   1   2   3   4   5   6

The End!