genome.fa.s5320.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005320.1 Hibiscus syriacus cultivar Beakdansim tig00012040_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  539900

Tables:   1   2   3   

This is table  2  of  3  ( 263 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186170--186256	44	2.0	44	86	0	120	33	8	20	37	1.82
186197--186256	14	4.1	14	72	8	57	30	8	21	40	1.83
186335--186399	23	2.8	23	71	0	58	24	20	23	32	1.98
186335--186425	46	2.0	46	85	8	123	21	19	23	35	1.96
186364--186433	23	3.0	23	72	0	68	18	20	24	37	1.94
187049--187080	16	2.0	16	93	0	55	46	3	6	43	1.44
189331--189372	17	2.5	17	92	3	68	30	19	14	35	1.91
193369--193549	69	2.6	69	83	5	204	17	22	25	34	1.95
193369--193517	23	6.4	23	83	1	190	16	21	25	36	1.94
193377--193512	46	2.9	46	90	3	211	17	22	25	34	1.96
193393--193532	46	3.0	44	85	7	163	17	22	25	35	1.95
193519--193577	24	2.5	24	97	0	109	18	28	23	28	1.98
195192--195259	20	3.4	20	70	0	64	19	20	25	35	1.96
207000--207063	31	2.2	31	81	16	82	51	9	7	31	1.62
207098--207169	26	3.0	24	68	27	62	62	4	6	26	1.39
207298--207323	3	8.7	3	100	0	52	0	34	30	34	1.58
207663--207697	18	1.9	18	88	0	52	28	20	22	28	1.98
209364--209404	18	2.3	18	91	4	66	63	2	4	29	1.28
223502--223573	33	2.2	33	97	0	135	20	16	13	48	1.80
229065--229108	23	2.0	21	86	8	61	25	0	0	75	0.81
231542--231595	23	2.3	24	84	9	67	25	31	0	42	1.55
233144--233266	58	2.1	59	86	4	167	36	39	2	21	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233144--233266	30	4.1	30	86	5	169	36	39	2	21	1.66
244824--244857	12	2.7	13	86	9	52	44	8	5	41	1.60
253764--253807	21	2.1	21	95	4	81	13	20	0	65	1.26
253769--253815	20	2.3	21	85	3	60	17	19	0	63	1.30
258330--258367	20	1.9	20	94	0	67	31	34	15	18	1.92
258378--258539	65	2.5	65	88	1	236	30	24	16	29	1.96
258378--258557	64	2.8	64	84	4	227	30	24	16	28	1.97
258747--258773	13	2.1	13	100	0	54	66	25	7	0	1.17
266790--266843	19	2.8	19	100	0	108	22	35	16	25	1.95
266809--266951	64	2.2	65	86	1	198	29	24	16	29	1.97
266809--266971	64	2.5	64	80	8	186	28	25	17	28	1.97
267168--267195	13	2.2	13	100	0	56	67	25	7	0	1.15
270094--270133	8	4.8	8	85	11	53	65	0	2	32	1.06
270094--270133	18	2.4	16	87	8	53	65	0	2	32	1.06
278283--278464	43	4.2	43	77	9	174	46	7	19	26	1.77
278299--278464	44	3.8	44	77	6	178	45	8	20	25	1.79
279263--279335	3	24.3	3	100	0	146	65	0	34	0	0.93
286286--286331	22	2.0	22	83	12	56	34	0	13	52	1.40
286637--286756	59	2.1	58	88	4	179	25	16	19	38	1.92
293026--293088	18	3.5	18	88	0	99	19	22	12	46	1.83
293009--293088	36	2.2	36	88	0	115	22	22	11	43	1.84
300731--300779	20	2.5	20	96	0	89	14	14	28	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301046--301111	24	2.8	24	86	9	82	62	0	6	31	1.20
301061--301111	3	17.3	3	84	11	70	64	0	3	31	1.11
310154--310226	30	2.4	30	90	0	110	36	13	20	28	1.91
310418--310493	37	2.1	37	90	5	118	43	13	18	25	1.86
313836--313869	17	1.9	18	94	5	61	58	5	0	35	1.22
324235--324293	24	2.6	21	78	19	57	69	6	22	1	1.21
324242--324292	25	2.1	22	82	13	57	66	7	25	0	1.18
324248--324308	26	2.4	25	78	8	61	72	4	21	1	1.13
326030--326317	156	1.8	156	84	2	391	36	22	14	26	1.93
326269--326440	65	2.7	64	80	7	192	38	19	14	26	1.91
326402--326662	124	2.1	124	86	1	353	34	23	14	26	1.94
326760--326837	34	2.3	34	97	0	147	34	29	12	23	1.92
326958--327287	83	3.9	83	80	5	362	33	19	19	28	1.96
326960--327271	166	1.9	169	86	3	452	33	18	19	28	1.96
328497--328565	29	2.3	29	83	11	79	20	11	10	57	1.62
334018--334135	39	3.0	39	97	0	227	38	5	19	35	1.76
335963--336012	23	2.3	22	89	6	75	32	28	14	26	1.94
336671--336717	18	2.5	20	89	6	71	31	25	12	29	1.93
342797--342826	14	2.1	14	100	0	60	36	16	6	40	1.75
342880--342912	12	2.6	13	90	9	59	39	6	9	45	1.61
343149--343184	15	2.3	16	90	4	56	75	16	0	8	1.04
344651--344688	12	2.9	13	88	7	51	44	7	10	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349332--349380	19	2.6	19	96	0	89	30	24	16	28	1.96
349370--349477	56	1.9	57	86	5	157	30	20	18	30	1.96
353301--353352	19	2.6	21	90	6	81	46	5	13	34	1.67
354240--354299	30	2.0	31	86	3	86	53	10	8	28	1.63
357502--357553	19	2.6	21	90	6	81	46	5	13	34	1.67
358358--358417	30	2.0	31	86	3	86	55	8	8	28	1.59
361043--361101	23	2.7	22	78	5	57	28	23	25	22	1.99
361003--361101	44	2.2	44	82	10	114	28	25	22	24	1.99
361517--361543	13	2.1	13	100	0	54	29	0	0	70	0.88
363779--363887	46	2.4	44	83	8	130	32	21	20	26	1.97
363824--363948	64	1.9	65	91	4	209	29	22	20	28	1.98
366454--366582	59	2.2	59	82	1	150	34	12	18	34	1.88
367228--367252	2	12.5	2	100	0	50	48	0	0	52	1.00
367366--367458	45	2.1	44	87	2	132	34	10	10	44	1.74
373055--373110	24	2.3	24	96	0	103	28	17	14	39	1.89
374300--374413	60	1.9	58	87	3	165	30	13	20	35	1.90
378094--378156	26	2.5	26	82	5	76	23	17	23	34	1.96
385377--385453	15	5.1	15	68	12	50	23	12	23	40	1.89
385579--385637	24	2.5	24	77	2	66	25	18	23	32	1.97
388545--388669	47	2.8	45	83	6	153	28	22	8	40	1.84
391477--391686	65	3.3	62	78	14	203	32	24	17	25	1.96
391563--391917	177	2.0	178	98	0	694	31	20	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400368--400527	65	2.5	63	82	8	180	31	22	17	28	1.96
400499--400547	19	2.6	19	84	9	57	24	28	20	26	1.99
420530--420590	20	2.8	22	78	12	72	21	26	31	21	1.98
420529--420590	21	2.8	23	76	11	76	20	25	32	20	1.98
426067--426095	10	2.9	10	100	0	58	20	20	41	17	1.90
428138--428363	114	2.0	114	84	5	296	26	25	17	31	1.97
433364--433408	21	2.2	21	84	4	56	11	28	33	26	1.91
433390--433440	23	2.3	23	86	6	79	19	21	41	17	1.91
438775--438826	20	2.6	19	87	6	68	32	15	32	19	1.93
438851--438926	22	3.8	20	76	8	73	32	14	22	30	1.94
439164--439455	54	5.3	54	84	6	397	28	18	19	33	1.95
443673--443882	65	3.3	63	74	16	189	30	23	19	26	1.98
449679--449762	23	3.7	23	72	13	84	21	26	21	30	1.98
452429--452638	65	3.3	63	80	11	221	30	24	19	25	1.98
455452--455502	20	2.5	20	84	6	68	35	17	27	19	1.94
455527--455596	22	3.5	20	74	16	63	34	15	20	30	1.93
455923--456274	54	6.5	54	89	0	481	31	18	17	32	1.94
455923--456315	108	3.6	108	84	1	473	31	18	17	32	1.94
455942--456315	162	2.3	162	84	2	430	31	18	17	31	1.95
466270--466317	24	2.0	24	100	0	96	33	20	20	25	1.97
467503--467568	30	2.2	30	94	0	114	33	21	25	19	1.97
469782--469837	22	2.6	22	80	11	71	33	28	23	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469896--469935	21	1.9	21	89	0	62	35	17	17	30	1.93
472112--472137	13	2.0	13	100	0	52	76	7	0	15	0.99
473284--473324	17	2.4	17	88	8	57	31	0	9	58	1.31
479871--480800	54	17.4	54	85	2	1147	26	18	19	34	1.95
479871--480800	161	5.8	161	85	2	1181	26	18	19	34	1.95
481073--481113	18	2.3	18	86	0	55	31	17	2	48	1.60
485442--486215	54	14.4	54	85	2	939	28	18	18	34	1.95
490685--490734	26	1.9	26	100	0	100	20	34	16	30	1.94
492159--492213	4	13.8	4	80	0	65	40	25	9	25	1.85
492163--492222	8	7.5	8	92	0	102	38	25	11	25	1.89

Tables:   1   2   3