genome.fa.s5320.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005320.1 Hibiscus syriacus cultivar Beakdansim tig00012040_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  539900

Tables:   1   2   3   

This is table  3  of  3  ( 263 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492167--492221	4	13.8	4	80	0	56	36	25	12	25	1.91
492607--492658	23	2.3	23	96	0	95	36	7	9	46	1.66
493806--493845	4	10.0	4	83	0	53	42	25	7	25	1.80
493806--493844	8	4.9	8	96	0	69	41	25	7	25	1.82
495173--495562	54	7.2	54	89	1	541	32	15	16	35	1.90
496288--496372	44	1.9	44	82	0	107	29	17	20	32	1.95
499202--499252	20	2.4	21	87	6	68	31	15	21	31	1.95
503063--503206	55	2.6	55	89	0	207	27	20	22	28	1.99
503757--503808	23	2.3	23	86	3	70	21	23	25	30	1.99
509946--510067	55	2.2	55	89	0	181	29	18	23	27	1.98
519603--519809	104	2.0	104	87	1	292	25	18	28	28	1.98
522372--522420	21	2.3	21	85	0	62	22	16	28	32	1.95
522414--522464	23	2.3	23	86	3	68	23	21	23	31	1.98
526293--526487	82	2.4	82	86	1	275	37	13	22	26	1.92
527635--527680	16	2.9	16	90	6	67	43	17	19	19	1.88
531350--531797	54	8.3	54	89	1	657	31	13	18	36	1.90
531873--532061	82	2.3	82	87	1	281	34	15	21	28	1.94
533215--533638	131	3.2	131	86	3	521	29	22	16	30	1.96
533655--533749	48	2.0	47	83	6	120	25	22	16	35	1.95
534480--534518	18	2.1	19	90	4	62	79	5	12	2	1.00
534480--534537	19	3.1	18	83	11	64	79	3	10	6	1.04
535264--535522	45	5.8	45	95	0	448	30	22	6	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535626--535789	40	4.1	40	90	0	256	34	26	16	23	1.95

Tables:   1   2   3

The End!