Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005349.1 Hibiscus syriacus cultivar Beakdansim tig00012136_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1796274

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 858 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1668629--1670310
839
2.0
839
99
0
3310
26
20
17
35
1.95
1675504--1675596
3
31.0
3
85
8
118
62
0
4
33
1.15
1697242--1697275
18
1.9
18
88
5
52
29
0
2
67
1.05
1699242--1699393
77
2.0
78
80
6
175
40
7
5
46
1.54
1704964--1705016
27
2.0
26
96
3
97
24
26
15
33
1.95
1705211--1705242
2
15.5
2
93
6
55
50
3
0
46
1.17
1709734--1709775
2
21.5
2
95
4
77
50
0
0
50
1.00
1710977--1711021
22
2.0
23
86
4
65
22
48
0
28
1.50
1715412--1715509
48
2.0
49
98
2
189
24
22
14
38
1.91
1718827--1718856
14
2.1
14
100
0
60
46
23
0
30
1.52
1743511--1743646
32
4.3
32
77
3
123
27
25
26
20
1.99
1745655--1745717
33
1.9
33
90
0
99
28
34
15
20
1.94
1746597--1746621
8
3.1
8
100
0
50
12
0
0
88
0.53
1749127--1749278
77
2.0
78
81
6
184
40
7
5
46
1.54
1759836--1759885
13
3.8
14
76
12
52
14
10
0
76
1.03
1790850--1790916
32
2.1
32
100
0
134
52
17
14
14
1.75
1793054--1793133
30
2.7
29
77
9
90
26
28
26
18
1.98
1795101--1795170
32
2.2
32
87
5
97
28
35
15
20
1.93

Tables:   1   2   3   4   5   6   7   8

The End!