genome.fa.s5397.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005397.1 Hibiscus syriacus cultivar Beakdansim tig00012370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1218879

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 577 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597854--597889	2	18.0	2	100	0	72	50	0	0	50	1.00
598946--598985	21	2.0	20	85	5	53	20	22	20	37	1.94
600526--600568	16	2.6	16	81	3	50	53	4	2	39	1.34
600715--600775	14	4.4	15	67	26	53	57	13	1	27	1.46
600695--600787	40	2.3	40	94	0	168	56	10	3	29	1.49
601055--601999	315	3.0	315	95	0	1676	31	12	15	39	1.85
601981--602006	7	3.7	7	100	0	52	11	0	42	46	1.40
604151--604189	16	2.4	17	87	12	55	56	0	2	41	1.13
608590--608623	16	2.1	17	88	5	52	52	0	2	44	1.16
612773--612840	31	2.2	32	80	15	81	35	25	4	35	1.76
615165--615232	10	6.1	10	72	21	55	60	22	10	7	1.54
615188--615240	13	4.2	13	73	24	51	60	24	9	5	1.49
615167--615240	23	3.2	23	84	5	96	60	24	9	5	1.48
615495--615546	24	2.1	26	89	7	81	53	17	13	15	1.72
615751--615826	38	2.0	38	94	0	134	34	26	10	28	1.90
622275--622320	22	2.1	22	87	0	65	19	8	8	63	1.49
622461--622550	21	4.4	21	87	4	139	30	16	24	28	1.97
622580--622630	21	2.4	21	86	0	75	27	21	27	23	1.99
622500--622669	82	2.1	81	93	1	286	27	20	25	27	1.99
622742--622778	19	1.9	19	88	0	56	21	13	29	35	1.92
625088--625125	20	1.9	20	94	0	67	44	10	23	21	1.83
625088--625131	20	2.3	19	88	7	63	45	9	25	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626727--626777	2	26.0	2	96	4	95	50	0	0	49	1.00
627792--627820	2	14.5	2	100	0	58	51	0	0	48	1.00
629313--629339	2	13.5	2	100	0	54	51	0	0	48	1.00
636086--636133	2	24.0	2	100	0	96	50	0	0	50	1.00
636182--636223	20	2.0	21	86	4	59	45	2	0	52	1.13
640119--640159	6	6.8	6	100	0	82	65	0	0	34	0.93
643687--643730	6	7.5	6	97	2	81	31	52	15	0	1.44
644413--644443	6	5.2	6	100	0	62	0	16	48	35	1.46
644549--644682	20	6.4	20	78	9	115	20	23	17	38	1.93
644547--644680	63	2.1	63	92	0	223	20	24	18	36	1.95
655112--655149	20	1.9	20	88	0	58	47	2	2	47	1.30
660590--660661	3	24.0	3	85	0	90	59	2	5	31	1.35
660864--660949	2	44.0	2	95	4	158	51	0	0	48	1.00
663865--663912	19	2.5	19	100	0	96	50	14	0	35	1.44
664052--664119	20	3.5	20	83	4	102	33	23	20	22	1.97
664057--664109	19	2.7	20	85	5	72	37	24	20	16	1.93
664688--664762	21	3.6	21	70	10	64	22	17	22	37	1.94
664687--664783	41	2.4	41	91	0	149	23	16	23	36	1.94
664709--664782	20	3.7	20	78	10	87	22	17	27	32	1.97
664867--664912	19	2.4	19	85	3	56	21	17	30	30	1.96
664878--664914	19	1.9	19	94	0	65	21	16	29	32	1.95
666655--666694	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667565--667598	17	2.0	17	88	11	52	55	0	0	44	0.99
667679--667718	14	2.9	14	96	0	71	20	15	15	50	1.79
675194--675240	24	2.0	24	82	0	58	10	21	14	53	1.71
682047--682124	3	26.0	3	100	0	156	66	0	33	0	0.92
687287--687361	30	2.5	30	85	8	91	62	5	1	30	1.25
693909--694040	65	2.0	65	94	0	228	38	19	3	37	1.70
701283--701362	39	2.1	39	92	0	133	51	6	10	32	1.60
707810--707877	34	2.0	34	97	0	127	39	20	27	11	1.88
709728--709785	29	2.0	29	86	0	80	15	34	27	22	1.94
709842--709905	10	6.4	9	79	16	65	26	34	28	10	1.90
709849--709906	20	2.9	20	87	5	82	29	32	25	12	1.92
709883--709963	33	2.5	33	89	0	117	25	27	35	11	1.90
709890--709976	33	2.6	33	87	3	113	26	26	36	10	1.88
709979--710077	50	2.0	50	95	0	180	15	21	39	24	1.91
710115--710171	29	2.0	29	96	0	105	19	29	35	15	1.93
712443--712694	60	4.1	60	81	8	219	41	4	21	32	1.73
712705--712782	40	2.0	40	89	0	120	28	16	32	23	1.96
720199--720271	29	2.4	31	79	4	87	27	21	5	45	1.74
721738--721993	43	6.0	43	77	8	168	34	20	19	25	1.96
721753--721995	42	5.7	42	80	4	238	33	20	20	25	1.97
721762--721995	85	2.8	84	81	7	258	34	20	20	25	1.96
724824--725061	30	7.9	30	84	0	253	21	22	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729443--729524	2	41.0	2	97	0	155	50	1	0	48	1.08
730445--730524	19	4.0	19	73	17	81	18	11	18	51	1.75
730771--730922	42	3.6	42	91	0	250	17	15	19	48	1.81
731111--731181	31	2.3	32	86	13	96	47	0	0	52	1.00
731119--731162	22	2.0	23	86	4	63	45	0	0	54	0.99
731161--731201	20	2.0	20	85	0	55	53	0	2	43	1.13
731251--731295	23	2.0	23	86	0	63	53	2	2	42	1.25
731356--731422	21	3.2	20	76	18	64	53	1	0	44	1.09
731616--731667	15	3.5	15	81	5	70	32	17	7	42	1.77
731616--731675	15	4.1	15	78	4	68	33	18	8	40	1.80
731616--731675	29	2.0	29	93	3	102	33	18	8	40	1.80
743584--743645	31	2.0	31	96	0	115	43	9	16	30	1.80
749325--749461	5	27.4	5	95	0	238	56	0	2	40	1.14
755907--755948	21	2.0	21	85	0	57	54	2	2	40	1.26
761067--761243	60	2.9	60	80	12	175	44	5	20	29	1.74
761353--761415	30	2.1	30	84	3	81	25	17	11	46	1.81
761608--761699	30	3.1	30	80	6	98	51	14	13	21	1.76
768784--768824	21	1.9	21	85	5	55	60	4	4	29	1.38
770564--770717	31	5.0	31	92	3	242	37	21	19	21	1.94
770894--770940	23	2.0	24	91	4	78	34	21	0	44	1.52
771517--771561	21	2.1	21	87	0	63	15	24	28	31	1.96
774356--774509	31	5.0	31	93	1	256	37	20	20	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774688--774734	23	2.0	24	91	4	78	34	21	0	44	1.52
775314--775358	21	2.1	21	87	0	63	15	24	28	31	1.96
776598--776636	20	2.0	20	85	5	53	61	0	0	38	0.96
778642--778732	39	2.5	35	84	15	105	10	23	39	26	1.87
779532--779572	20	2.0	20	90	0	64	56	0	7	36	1.27
785817--785873	26	2.3	25	85	11	73	49	3	3	43	1.36
786641--786738	36	2.7	36	95	0	169	19	24	20	35	1.95
788406--788439	17	1.9	18	88	5	52	20	20	20	38	1.94
789620--789698	36	2.2	36	81	4	97	20	51	11	16	1.74
790307--790388	31	2.7	31	77	5	78	35	13	7	43	1.72
798476--798507	15	2.0	17	88	11	50	68	0	3	28	1.04
799743--799790	22	2.2	23	88	7	73	39	10	0	50	1.37
804821--804861	21	1.9	22	95	5	75	51	0	4	43	1.23
804821--804879	21	2.8	21	78	17	59	49	0	3	47	1.18
805436--805588	58	2.6	59	89	2	218	40	16	13	30	1.86
806346--807296	483	2.0	485	94	2	1702	25	17	24	32	1.97
808168--808284	59	2.0	60	93	1	200	29	20	15	34	1.93
809956--810059	50	2.1	50	100	0	208	27	23	21	27	1.99
812474--812512	19	2.0	20	85	5	53	46	7	0	46	1.31
812744--812804	31	2.0	31	90	0	95	42	14	8	34	1.76
814427--814488	32	1.9	33	83	3	81	43	6	11	38	1.66
814677--814741	2	33.0	2	93	3	114	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
818645--818760	25	4.8	25	72	17	93	45	0	0	53	1.06
818683--818760	8	9.6	8	72	12	61	47	0	0	52	1.00
819365--819404	12	3.2	12	85	7	53	60	0	2	37	1.11
819447--819487	19	2.2	19	86	0	55	56	0	0	43	0.99
819817--819850	13	2.6	13	86	13	52	67	2	2	26	1.19
825759--825805	19	2.5	19	89	0	76	48	0	8	42	1.33
827697--827743	24	2.0	24	91	0	76	46	0	0	53	1.00
829611--829637	7	3.9	7	100	0	54	14	0	44	40	1.46
834199--834356	21	7.8	20	70	7	77	37	24	17	19	1.93
834324--834517	20	9.6	20	76	8	76	35	25	19	19	1.95

Tables:   1   2   3   4   5