genome.fa.s5467.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005467.1 Hibiscus syriacus cultivar Beakdansim tig00012524_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  580209

Tables:   1   2   3   

This is table  2  of  3  ( 298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205803--205901	21	4.8	21	96	2	182	20	36	19	24	1.95
205803--205901	41	2.4	42	94	3	182	20	36	19	24	1.95
205964--206018	20	2.7	21	94	2	94	20	34	18	27	1.95
206127--206181	20	2.7	20	94	2	92	27	18	34	20	1.95
206244--206361	21	5.7	21	93	2	202	26	17	35	20	1.95
206201--206361	83	1.9	82	83	7	209	25	18	34	22	1.96
206244--206361	62	1.9	63	94	1	211	26	17	35	20	1.95
207354--207401	19	2.5	20	82	3	62	52	6	12	29	1.63
208548--208587	21	1.9	21	89	0	62	30	10	10	50	1.69
208700--208757	30	1.9	30	96	0	107	31	3	18	46	1.66
208838--208895	21	2.8	21	100	0	116	20	36	18	24	1.95
208958--209012	20	2.7	21	94	2	94	20	34	18	27	1.95
210350--210388	21	1.9	21	84	5	53	28	0	12	58	1.34
210747--210849	44	2.4	44	90	1	154	30	16	21	32	1.95
216755--216799	20	2.2	20	96	0	81	37	22	17	22	1.94
219676--219714	21	1.9	21	84	5	53	28	0	12	58	1.34
220073--220175	44	2.4	44	90	1	154	30	16	21	32	1.95
233561--233592	17	1.9	17	93	6	57	43	6	0	50	1.27
233609--233668	13	4.8	12	75	16	50	40	1	1	56	1.19
233627--233679	27	2.0	27	85	7	72	37	3	0	58	1.16
239647--240073	150	2.9	147	81	7	470	29	10	20	39	1.85
242132--242183	24	2.2	24	89	0	77	26	9	19	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258126--258193	35	1.9	35	90	0	109	35	5	23	35	1.79
263068--263093	6	4.3	6	100	0	52	53	0	46	0	1.00
267385--267424	20	2.0	20	85	9	55	20	32	25	22	1.98
267387--267446	23	2.7	23	80	7	72	20	35	25	20	1.96
267428--267467	21	1.9	21	84	0	53	27	37	25	10	1.88
269068--269092	12	2.1	12	100	0	50	28	32	40	0	1.57
271250--271291	19	2.2	19	87	8	59	50	7	4	38	1.51
271337--271414	11	6.6	11	70	18	50	56	3	3	35	1.36
273114--273153	21	1.9	21	85	10	55	30	0	25	45	1.54
274076--274807	367	2.0	367	96	0	1365	34	12	19	33	1.90
275995--276193	108	1.8	109	83	3	267	54	14	14	16	1.72
278561--278629	6	11.3	6	81	9	68	0	21	1	76	0.86
278561--278629	18	3.8	18	79	9	86	0	21	1	76	0.86
290520--290754	108	2.2	108	80	6	262	50	14	14	20	1.78
294900--294954	20	2.7	21	66	8	51	32	16	18	32	1.93
296721--296784	32	2.0	32	96	0	119	9	32	15	42	1.79
300938--301113	22	8.0	22	73	18	120	40	3	10	44	1.57
300954--301112	86	1.8	85	84	12	218	40	3	10	45	1.56
301036--301166	24	5.1	26	75	13	121	43	4	8	43	1.55
301145--301189	21	2.1	21	84	12	56	46	2	6	44	1.42
301036--301183	51	3.0	47	75	17	131	43	4	8	43	1.54
301208--301256	2	25.0	2	95	4	91	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302458--302495	20	1.9	20	100	0	76	21	5	0	73	1.02
302441--302524	28	3.0	28	81	6	80	22	4	1	71	1.12
306062--306089	2	14.0	2	100	0	56	50	0	0	50	1.00
311288--311494	46	4.6	45	93	1	326	30	23	6	39	1.80
311293--311494	91	2.2	91	91	3	327	30	23	6	39	1.81
319454--319582	22	5.7	22	79	15	138	41	2	13	42	1.56
319408--319582	22	7.3	26	76	15	98	44	2	11	41	1.53
319419--319614	91	2.1	93	83	5	245	41	3	12	42	1.59
319454--319597	22	6.4	22	74	14	69	40	2	13	43	1.59
319599--319645	24	2.0	23	83	4	58	57	6	4	31	1.43
322505--322558	25	2.2	25	86	3	74	5	14	20	59	1.55
322515--322565	25	2.0	25	92	0	84	3	15	19	60	1.50
324344--324371	14	2.0	14	100	0	56	57	7	7	28	1.52
326046--326083	18	2.1	18	90	0	58	36	28	18	15	1.92
328490--328564	30	2.6	30	91	4	118	42	1	16	40	1.56
329892--329957	3	22.0	3	82	11	82	39	0	0	60	0.97
329965--330000	14	2.5	15	86	13	58	69	0	0	30	0.89
329966--329999	11	3.1	11	91	8	52	67	0	0	32	0.91
338957--339250	81	3.6	81	94	0	489	27	12	21	38	1.90
341908--341986	22	3.6	22	87	3	106	32	15	13	37	1.87
342424--343265	113	7.5	113	92	2	1326	38	14	19	27	1.91
342424--343265	223	3.8	225	91	2	1306	38	14	19	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342424--343265	336	2.5	334	91	3	1339	38	14	19	27	1.91
343535--343591	3	19.0	3	79	13	64	40	0	0	59	0.97
343590--343631	14	3.0	14	85	0	57	71	0	0	28	0.86
348192--348237	21	2.2	21	92	0	74	23	28	15	32	1.95
348463--348503	21	2.0	21	90	0	64	26	29	9	34	1.88
348130--348665	267	2.0	267	95	0	975	26	25	15	32	1.95
356835--357559	215	3.4	214	92	2	1213	32	19	14	34	1.91
357173--357269	42	2.3	41	75	6	106	29	22	21	25	1.99
357378--357484	42	2.6	41	82	2	133	29	22	22	25	1.99
357603--357677	36	2.1	36	97	0	141	17	18	29	34	1.94
359701--359731	16	1.9	16	100	0	62	41	38	0	19	1.51
366484--366513	2	15.0	2	92	0	51	50	3	0	46	1.18
368217--368256	16	2.5	16	88	12	64	60	0	0	40	0.97
368321--368563	124	2.0	124	88	1	362	37	14	18	29	1.91
368625--368689	21	3.4	21	64	24	61	38	12	24	24	1.90
368516--368664	65	2.3	63	84	4	181	34	15	20	28	1.93
368604--368814	36	5.7	36	90	1	260	37	14	18	28	1.90
368603--368865	72	3.5	73	82	8	269	38	14	17	29	1.90
368602--368865	39	7.0	38	86	4	281	38	14	17	29	1.90
372877--372934	29	1.9	29	86	6	80	55	10	17	17	1.69
375754--375915	81	2.0	81	100	0	324	43	7	18	30	1.78
378073--378129	14	4.2	13	70	16	53	38	1	1	57	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379256--379298	13	3.3	12	81	12	50	34	23	16	25	1.95
379316--379358	23	2.0	22	90	9	70	23	23	23	30	1.99
386340--386389	25	2.0	26	88	4	75	28	16	28	28	1.97
387487--387552	32	2.1	32	94	0	114	40	12	22	24	1.88
390853--390902	25	2.0	26	88	4	75	28	16	28	28	1.97
404009--404041	12	2.8	12	90	4	50	60	0	15	24	1.35
404009--404043	11	3.1	11	88	8	52	60	0	17	22	1.37
404056--404104	4	12.0	4	79	12	55	69	0	2	28	1.00
404837--404889	23	2.4	21	79	14	63	62	11	3	22	1.45
404880--405045	81	2.0	81	90	4	264	57	10	0	31	1.37
408744--408777	17	1.9	18	88	5	52	41	0	17	41	1.50
419560--419605	23	2.0	23	100	0	92	43	26	8	21	1.81
425752--425841	9	11.0	8	71	20	53	58	0	0	41	0.98
425750--425840	31	2.8	33	87	12	136	60	0	0	39	0.97
430540--430597	27	2.1	27	100	0	116	34	6	3	55	1.44
430924--430990	27	2.5	27	97	0	125	53	2	2	40	1.31
435664--435718	24	2.3	24	87	0	74	7	12	16	63	1.50
437547--437593	21	2.2	21	96	0	85	29	17	23	29	1.97
439658--439850	76	2.5	77	87	4	259	23	31	23	20	1.98
445654--445693	21	1.9	21	89	0	62	25	40	25	10	1.86
448232--448431	76	2.6	77	85	6	257	23	32	22	21	1.98
450676--450727	27	1.9	27	96	0	95	17	17	21	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451383--451865	54	8.9	54	85	1	610	32	17	17	32	1.93
451748--451833	27	3.2	27	69	18	88	33	19	17	29	1.95
456564--456643	39	2.1	39	92	0	133	36	11	21	31	1.88
468681--469172	54	9.1	55	80	5	497	33	17	15	32	1.92
469055--469140	27	3.2	27	63	18	70	37	16	15	31	1.89
470904--470938	18	1.9	18	88	0	52	42	14	14	28	1.84
476922--477017	21	4.6	21	74	0	75	22	14	21	40	1.90
476922--477009	42	2.1	42	84	0	113	23	13	22	39	1.90
477009--477045	14	2.6	14	95	0	65	27	16	24	32	1.96
480704--480747	21	2.0	24	82	13	58	38	6	9	45	1.63

Tables:   1   2   3