genome.fa.s5467.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005467.1 Hibiscus syriacus cultivar Beakdansim tig00012524_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  580209

Tables:   1   2   3   

This is table  3  of  3  ( 298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482342--482519	45	4.0	45	92	4	297	38	6	23	32	1.79
482408--482481	24	3.2	24	63	36	63	45	2	20	31	1.65
482921--482945	12	2.1	12	100	0	50	24	16	24	36	1.94
485182--485270	21	4.2	21	66	11	56	23	16	19	40	1.91
485283--485333	21	2.4	21	83	0	66	23	21	21	33	1.97
490328--490366	21	1.9	19	90	10	60	41	7	15	35	1.76
490808--491043	54	4.4	54	85	2	312	37	21	16	25	1.93
490805--491022	108	2.0	108	90	0	346	38	21	16	23	1.92
491540--491605	20	3.3	20	89	0	105	15	43	12	28	1.82
492538--492576	12	3.2	12	85	0	51	71	0	25	2	0.98
500101--500130	2	15.0	2	100	0	60	50	0	0	50	1.00
509078--509112	18	1.9	18	94	0	61	25	31	22	20	1.98
509898--509931	15	2.3	15	95	5	61	32	11	20	35	1.89
520606--520633	10	2.8	10	100	0	56	32	0	28	39	1.57
520814--520866	19	2.8	19	94	0	97	32	16	24	26	1.97
523998--524029	15	2.1	15	94	0	55	31	43	9	15	1.78
526392--526442	22	2.3	22	100	0	102	25	39	15	19	1.91
530846--530889	21	2.2	20	91	4	70	68	6	0	25	1.14
530881--530939	16	3.7	16	100	0	118	47	10	5	37	1.59
530945--530991	13	3.9	12	83	16	62	55	0	0	44	0.99
530945--530999	23	2.4	24	84	9	78	60	0	0	40	0.97
543855--543929	35	2.1	35	87	0	105	45	22	0	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543925--544003	35	2.3	35	88	0	122	45	0	12	41	1.42
544699--544747	12	4.4	11	82	10	55	30	0	0	69	0.89
544699--544747	11	4.5	11	82	7	55	30	0	0	69	0.89
545530--545570	19	2.2	19	86	8	57	60	0	0	39	0.96
546468--546616	41	3.6	40	70	11	122	27	18	20	33	1.96
546473--546698	82	2.8	82	83	4	262	27	17	21	33	1.96
547926--547967	16	2.8	16	82	7	52	64	14	9	11	1.50
548032--548106	10	7.7	10	69	21	61	57	21	12	9	1.62
548036--548100	16	4.1	16	95	0	121	56	23	12	7	1.61
548308--548357	11	4.4	11	78	9	55	30	26	18	26	1.98
548406--548438	16	2.1	16	100	0	66	24	15	12	48	1.78
548901--548947	14	3.4	14	87	0	58	48	27	17	6	1.71
551946--552001	19	3.0	19	69	21	55	48	1	3	46	1.30
551927--552001	38	2.0	38	92	2	125	46	2	2	48	1.30
552908--553118	110	1.9	112	91	1	345	45	9	18	27	1.79
554417--554692	57	4.8	57	90	0	435	33	9	18	38	1.83
554899--555574	68	10.0	68	89	1	1000	30	13	25	30	1.93
554901--555574	135	5.0	136	90	2	982	30	12	25	30	1.93
554901--555574	203	3.3	202	88	2	1003	30	12	25	30	1.93
555696--555818	47	2.7	46	88	3	194	48	7	21	21	1.74
555801--555913	45	2.5	45	88	1	172	39	11	21	27	1.87
558980--559049	24	3.0	24	85	2	88	20	24	25	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564865--564898	17	2.1	17	88	5	52	47	0	17	35	1.48
564965--565032	24	2.8	24	97	0	127	17	27	26	27	1.98
566615--566796	57	3.2	57	90	1	285	34	9	18	37	1.83
566964--567293	68	4.9	68	92	0	525	30	13	25	30	1.94
567394--567613	47	4.8	46	92	2	345	47	7	21	23	1.76
567394--567613	93	2.4	92	90	3	361	47	7	21	23	1.76
567592--567707	45	2.6	45	81	4	126	39	11	23	25	1.88
571546--571582	2	19.0	2	94	5	67	51	0	0	48	1.00
572443--572473	2	15.5	2	100	0	62	48	0	0	51	1.00
572877--573040	60	2.7	60	85	0	247	30	20	4	43	1.73
575488--575534	2	23.5	2	100	0	94	51	0	0	48	1.00
576965--576996	16	2.0	16	93	0	55	18	28	34	18	1.95
578964--579101	44	3.1	45	90	2	199	29	23	8	38	1.85
578987--579115	44	3.0	43	93	3	206	27	23	10	38	1.88

Tables:   1   2   3

The End!