genome.fa.s5546.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005546.1 Hibiscus syriacus cultivar Beakdansim tig00012840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1755203

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 904 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1650622--1650676	2	27.5	2	100	0	110	50	0	0	49	1.00
1650773--1650826	26	2.1	26	100	0	108	14	18	12	53	1.72
1650773--1650834	26	2.4	26	89	5	72	16	17	11	54	1.70
1651162--1651191	2	15.0	2	100	0	60	50	0	0	50	1.00
1668538--1668572	18	1.9	18	88	0	52	22	17	11	48	1.79
1674372--1674858	229	2.1	228	95	0	875	44	8	7	39	1.63
1675137--1675183	20	2.4	19	89	10	76	55	10	17	17	1.69
1674925--1675397	181	2.6	182	89	1	680	42	14	16	26	1.86
1677597--1677661	21	3.1	21	79	0	76	38	13	30	16	1.88
1677695--1677760	33	2.0	33	90	0	105	28	0	48	22	1.51
1679556--1679604	19	2.6	19	93	0	80	30	2	10	57	1.43
1679713--1681270	199	7.8	199	98	0	2911	36	15	16	32	1.89
1682730--1682803	6	12.3	6	77	0	58	36	8	35	20	1.82
1682745--1682816	3	24.0	3	75	0	63	36	5	34	23	1.78
1682733--1682803	36	2.0	36	94	0	124	35	8	35	21	1.84
1682730--1682816	18	5.0	18	73	8	81	36	6	34	21	1.81
1682733--1682803	12	5.9	12	84	0	88	35	8	35	21	1.84
1684284--1684766	182	2.7	181	94	2	826	34	14	16	34	1.89
1687192--1687256	25	2.6	25	80	0	85	35	9	13	41	1.77
1687602--1687674	23	3.2	23	86	7	103	34	2	21	41	1.68
1687602--1687699	46	2.1	45	81	7	108	33	5	18	42	1.72
1688102--1688138	18	2.1	18	89	0	56	32	5	10	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1688094--1688140	24	2.0	24	86	0	67	34	4	14	46	1.64
1688397--1688482	39	2.2	39	93	2	147	47	20	13	17	1.82
1688904--1688976	23	3.2	23	84	0	92	35	4	20	39	1.72
1689122--1689188	30	2.2	29	82	10	73	52	4	0	43	1.21
1689448--1689490	22	1.9	23	85	4	61	44	9	9	37	1.69
1690886--1690958	23	3.2	23	86	0	92	36	20	5	36	1.76
1693562--1693619	12	4.8	12	80	0	62	20	29	6	43	1.78
1695120--1695166	20	2.4	19	79	10	58	19	19	10	51	1.75
1694966--1695376	182	2.3	181	90	1	637	26	16	14	42	1.86
1698070--1698204	71	1.9	71	85	1	189	32	20	20	25	1.97
1698199--1698234	19	1.9	19	88	5	56	27	27	22	22	1.99
1700131--1700172	21	2.0	21	85	0	57	52	2	9	35	1.47
1703988--1704039	21	2.5	21	93	0	86	23	28	17	30	1.97
1704558--1704590	12	2.6	13	90	4	50	36	12	6	45	1.66
1706668--1706801	72	1.9	72	83	0	178	33	20	20	26	1.97
1715947--1715979	17	1.9	17	93	0	57	69	0	12	18	1.18
1718541--1718578	20	1.9	20	84	10	51	26	10	21	42	1.85
1719714--1719764	12	4.3	12	76	18	54	31	0	1	66	1.03
1719744--1719881	64	2.2	64	94	4	251	42	0	1	55	1.14
1719851--1719894	21	2.1	21	86	0	61	38	2	2	56	1.24
1722194--1722221	3	9.3	3	100	0	56	64	0	0	35	0.94
1723227--1723353	60	2.1	60	81	5	141	40	5	20	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1725586--1725638	20	2.7	19	85	5	61	39	15	26	18	1.90
1725660--1725731	19	3.6	19	80	12	81	27	13	27	30	1.94
1726883--1726950	24	3.0	22	77	12	75	20	16	30	32	1.94
1727304--1727335	12	2.5	13	90	10	57	46	6	9	37	1.61
1727308--1727336	12	2.4	12	100	0	58	48	6	6	37	1.57
1729530--1729578	20	2.5	20	96	0	89	36	4	26	32	1.75
1729603--1729660	20	2.7	22	86	7	75	31	20	27	20	1.98
1735963--1736050	28	3.2	28	61	20	67	37	9	18	35	1.82
1735838--1736207	55	6.7	56	91	1	550	37	10	18	33	1.85
1735838--1736207	111	3.3	112	90	2	559	37	10	18	33	1.85
1735838--1736207	166	2.2	166	88	1	544	37	10	18	33	1.85
1742413--1742484	19	3.5	20	77	15	76	29	15	26	29	1.96
1742413--1742484	22	3.6	19	78	15	74	29	15	26	29	1.96
1742807--1743195	56	7.0	56	87	2	525	35	11	19	33	1.88
1742807--1743195	111	3.5	110	88	2	530	35	11	19	33	1.88
1743723--1744161	226	1.9	226	88	1	639	39	14	16	30	1.88
1744328--1744370	2	21.5	2	95	0	77	0	0	46	53	1.00
1748368--1748690	165	2.0	165	83	2	407	33	14	10	40	1.81
1748533--1748961	194	2.2	194	89	0	653	32	13	11	42	1.80
1754238--1754280	22	2.0	22	86	9	61	41	4	2	51	1.35

Tables:   1   2   3   4   5   6   7   8

The End!