genome.fa.s5728.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005728.1 Hibiscus syriacus cultivar Beakdansim tig00013386_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  971753

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 661 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888833--888874	22	1.9	22	100	0	84	16	35	28	19	1.93
890819--890856	16	2.4	16	86	4	51	36	21	5	36	1.76
892169--892202	5	6.8	5	89	0	50	23	0	2	73	0.97
894935--894975	20	2.2	19	86	8	57	39	9	26	24	1.86
895126--895200	38	2.0	37	84	5	98	48	4	1	46	1.29
896787--896824	19	2.1	19	95	5	69	52	21	15	10	1.72
896791--896947	21	7.8	20	72	7	84	38	24	17	19	1.92
896914--897138	20	11.2	20	83	3	231	36	24	19	20	1.95
897849--897895	24	2.0	24	87	8	69	25	14	21	38	1.92
900393--900553	33	4.7	34	75	15	134	48	18	18	14	1.81
900379--900482	33	3.1	33	83	8	138	49	19	18	13	1.80
900393--900562	19	9.7	19	76	19	181	47	18	19	15	1.83
900421--900556	52	2.6	52	96	1	245	47	16	20	14	1.82
900552--900668	53	2.2	53	98	1	227	13	23	17	44	1.85
900571--900668	19	5.4	19	84	13	143	14	22	17	45	1.84
900771--900807	14	2.6	14	91	0	65	45	21	0	32	1.52
902722--902855	19	7.6	19	73	18	92	46	25	17	11	1.81
902757--902850	32	2.9	32	88	1	143	48	23	17	10	1.77
902851--902942	33	2.8	34	96	3	170	6	17	29	46	1.73
902851--902979	19	7.3	19	77	17	143	7	16	29	46	1.75
903027--903490	93	5.0	93	98	0	896	45	19	12	21	1.83
905198--905254	14	3.7	14	75	20	60	43	22	24	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905190--905271	33	2.5	33	100	0	164	47	19	23	9	1.79
905212--905276	19	3.7	19	74	19	77	44	21	23	10	1.83
905302--905338	19	1.9	19	100	0	74	10	21	18	48	1.78
905295--905371	20	3.8	20	83	6	93	11	25	18	44	1.84
905667--905721	22	2.5	22	75	0	65	21	14	40	23	1.90
905868--906060	20	9.6	20	85	4	228	19	19	25	34	1.96
906047--906129	21	4.0	21	73	6	78	25	16	24	33	1.96
912935--912971	15	2.4	16	82	13	51	62	0	32	5	1.18
920623--920669	21	2.2	21	96	0	85	27	31	19	21	1.97
920684--921319	21	30.6	21	73	13	453	19	19	24	35	1.96
920875--921132	124	2.1	126	91	3	414	20	19	22	36	1.95
920978--921279	148	2.1	145	92	3	498	19	19	25	35	1.95
920709--921345	272	2.4	268	89	4	933	20	19	24	35	1.96
921124--921345	84	2.7	82	92	2	363	19	19	25	35	1.96
922046--922173	19	6.3	19	76	13	130	34	21	19	25	1.96
922046--922173	61	2.1	61	97	0	238	34	21	19	25	1.96
924436--924468	16	2.1	16	94	0	57	57	15	0	27	1.38
924519--924671	9	18.6	8	65	17	55	66	0	0	32	0.96
924575--924629	25	2.2	25	78	9	60	67	0	0	32	0.91
924510--924681	33	5.2	33	87	8	251	64	0	0	34	0.98
924510--924686	35	5.3	33	87	10	245	63	0	0	35	0.99
931138--931175	20	1.9	20	94	0	67	18	15	34	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932844--932924	23	3.6	22	75	6	83	24	25	25	23	2.00
938393--938455	27	2.3	27	86	10	85	22	17	30	30	1.96
938351--938521	91	1.9	92	83	8	224	25	16	25	31	1.97
938483--938520	20	1.9	20	94	0	67	18	15	34	31	1.92
940642--940681	16	2.5	16	100	0	80	37	12	25	25	1.91
945528--945560	18	1.9	17	88	11	50	33	0	15	51	1.43
945884--945921	18	2.1	18	85	9	51	55	2	5	36	1.37
946547--946593	21	2.2	21	96	0	85	36	6	14	42	1.72
946905--946965	19	3.3	19	73	17	74	3	14	31	50	1.59
952332--952381	25	2.0	25	100	0	100	56	8	4	32	1.47
956695--956894	42	4.7	42	83	3	240	30	21	20	27	1.98
956695--956894	85	2.3	84	84	5	249	30	21	20	27	1.98
960627--961105	41	11.7	40	74	4	312	34	18	18	28	1.95
960641--961111	82	5.7	82	82	2	500	35	18	18	27	1.94
966140--966184	21	2.1	21	100	0	90	13	4	40	42	1.64
969217--969270	3	18.3	3	76	3	56	25	3	3	66	1.25
969231--969281	9	5.4	9	76	15	50	21	1	1	74	1.02

Tables:   1   2   3   4   5   6

The End!