genome.fa.s5819.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005819.1 Hibiscus syriacus cultivar Beakdansim tig00013636_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  637054

Tables:   1   2   3   

This is table  2  of  3  ( 286 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289604--289659	24	2.3	24	78	0	67	50	16	14	19	1.79
295263--295323	22	2.9	22	77	22	76	60	6	8	24	1.49
297603--297790	98	1.9	98	91	0	304	32	15	18	33	1.92
298042--298112	31	2.2	32	80	12	83	56	8	2	32	1.44
302091--302138	17	3.1	16	80	14	64	66	4	6	22	1.32
303335--303426	39	2.3	40	83	3	116	26	6	23	43	1.78
306496--306583	39	2.2	40	75	16	94	40	19	20	19	1.91
306512--306605	39	2.4	39	80	7	93	40	21	18	20	1.92
307629--307689	27	2.3	27	85	0	77	22	3	24	49	1.65
307697--307740	18	2.5	17	82	10	52	20	18	2	59	1.49
312233--312304	30	2.4	30	80	2	90	31	23	15	29	1.95
316815--316844	10	3.0	10	90	0	51	20	36	0	43	1.52
316829--316885	30	1.9	30	82	7	71	29	33	8	28	1.87
321507--321550	21	2.1	21	83	8	54	47	4	2	45	1.35
329174--329210	6	6.2	6	87	12	58	16	16	18	48	1.81
329174--329210	13	3.1	12	88	11	58	16	16	18	48	1.81
333430--333565	36	3.9	35	84	3	175	33	22	21	22	1.97
333433--333574	70	2.0	72	90	4	225	34	21	21	22	1.97
333571--334822	214	5.9	214	88	4	1800	33	15	18	32	1.92
333571--334810	430	2.9	427	88	3	1801	33	15	18	32	1.92
334335--334444	42	2.6	42	78	5	116	25	23	20	30	1.99
334771--334859	42	2.1	42	89	0	133	23	13	22	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337968--338012	20	2.2	20	100	0	90	42	8	15	33	1.78
342514--342558	23	2.0	23	100	0	90	33	0	17	48	1.48
343650--343746	45	2.2	44	92	1	158	28	24	7	39	1.82
343880--343991	59	1.9	59	85	3	154	33	18	11	35	1.87
343923--344304	59	6.5	58	74	10	303	31	20	10	37	1.87
343923--344304	119	3.2	118	85	5	497	31	20	10	37	1.87
346610--346671	24	2.6	24	86	0	88	48	17	12	20	1.80
347505--347567	27	2.3	28	83	2	74	25	11	20	42	1.85
349369--349426	14	4.1	14	80	8	64	31	27	18	22	1.97
349427--349511	37	2.3	37	86	6	120	20	23	20	36	1.95
352107--352225	31	3.8	31	75	0	103	15	25	26	31	1.96
354188--354336	79	1.9	79	92	0	253	28	16	19	35	1.94
354539--354612	32	2.4	31	86	6	105	33	31	21	13	1.92
354761--354820	24	2.5	24	81	7	68	48	13	15	23	1.79
360933--360962	11	2.7	11	94	0	51	50	3	0	46	1.18
363196--363277	40	2.0	40	100	0	164	23	17	26	32	1.96
363382--363507	47	2.8	45	85	5	164	39	7	23	29	1.83
366319--366440	29	4.4	29	77	19	113	74	4	18	3	1.11
366329--366450	46	2.8	42	75	22	117	75	4	17	3	1.09
366352--366440	24	3.7	24	85	11	112	74	3	17	4	1.13
366367--366439	22	3.2	22	90	9	103	73	4	17	4	1.14
366384--366453	34	2.1	34	81	10	81	74	2	18	4	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371794--371853	21	2.8	22	75	10	61	25	33	25	16	1.96
373422--373460	18	2.2	18	85	0	51	35	30	25	7	1.84
373728--373761	17	2.0	17	88	0	50	17	2	29	50	1.61
376112--376192	14	5.7	14	77	10	58	24	19	29	25	1.99
376114--376177	28	2.3	28	86	5	85	21	18	32	26	1.97
382367--382492	48	2.8	46	84	8	161	39	7	19	32	1.81
385643--385681	19	2.1	19	86	13	55	30	5	5	58	1.41
392563--393109	271	2.0	271	98	0	1067	26	20	14	38	1.91
398089--398122	2	17.0	2	93	0	59	50	2	0	47	1.16
403072--403151	2	40.0	2	100	0	160	50	0	0	50	1.00
403941--404162	39	5.7	39	83	3	275	36	15	17	31	1.91
403944--404162	79	2.8	78	83	2	278	36	15	16	31	1.90
403939--404155	118	1.8	117	87	2	319	36	15	16	31	1.89
404424--404548	59	2.1	59	83	2	153	32	17	26	24	1.97
404065--404719	249	2.6	251	86	2	931	33	16	20	29	1.95
404567--404661	38	2.5	38	87	0	136	37	13	16	31	1.88
404910--405141	58	4.1	57	74	14	212	41	18	8	31	1.80
410999--411023	6	4.2	6	100	0	50	84	0	0	16	0.63
410989--411030	21	2.0	21	85	4	57	80	2	0	16	0.81
410990--411062	22	3.3	22	76	3	67	72	4	2	20	1.14
413412--413604	98	2.0	98	87	0	278	31	15	18	34	1.92
414513--414600	32	2.7	31	79	6	95	25	27	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416610--416666	20	2.8	20	89	0	87	15	33	29	21	1.94
416672--416725	19	2.8	19	73	18	58	24	16	25	33	1.96
422005--422062	29	2.0	29	86	3	80	46	20	3	29	1.67
422128--422157	14	2.1	14	93	0	51	13	26	33	26	1.93
424379--424501	39	3.2	39	81	6	126	28	4	19	47	1.67
429139--429204	27	2.4	27	87	0	87	24	7	21	46	1.76
437850--437945	43	2.3	41	80	5	104	41	4	2	52	1.32
448722--448775	25	2.1	26	83	10	67	50	1	1	46	1.23
449044--449800	55	14.2	53	82	8	643	29	24	14	31	1.95
449018--449800	106	7.3	110	83	5	866	30	24	14	31	1.95
449647--449743	45	2.2	45	94	3	169	28	24	16	29	1.97
449592--449798	100	2.1	100	88	3	310	30	23	14	31	1.95
450847--450872	10	2.6	10	100	0	52	0	23	0	76	0.78
450831--450900	32	2.3	31	82	9	81	4	25	1	68	1.16
450870--450924	8	6.8	8	80	14	51	9	14	0	76	1.02
450880--450931	15	3.4	15	79	10	52	5	15	0	78	0.92
450857--450923	23	2.9	21	79	14	62	7	16	0	76	1.01
450843--450932	32	2.9	30	77	11	92	6	17	0	75	1.01
454215--454380	90	1.9	89	92	1	278	46	5	12	36	1.64
472302--472566	130	2.0	130	97	0	503	26	15	25	32	1.95
484996--485042	19	2.5	19	85	0	58	21	12	8	57	1.62
485476--485515	21	1.9	21	84	0	53	42	10	37	10	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489366--489727	194	1.9	189	81	6	442	40	9	10	38	1.73
493203--493235	14	2.4	14	94	0	57	33	6	30	30	1.82
493450--493475	3	8.7	3	100	0	52	0	0	30	69	0.89
494788--494847	21	2.9	21	73	11	61	65	5	0	30	1.14
494788--494844	22	2.5	24	83	11	66	66	5	0	28	1.13
495128--495177	23	2.2	23	100	0	100	24	32	12	32	1.91
495622--495665	21	2.0	21	87	12	63	2	18	9	70	1.24
496149--496243	3	31.7	3	83	8	122	65	0	2	32	1.05
496534--497263	109	6.6	113	91	5	1154	30	19	13	37	1.90
496524--497263	222	3.3	223	89	7	1125	30	19	13	37	1.90
497986--498214	84	2.8	82	90	4	338	33	22	13	30	1.92
498010--498214	84	2.5	83	93	3	353	35	23	13	28	1.92
498164--498479	52	6.1	52	97	0	598	36	24	15	24	1.93
499603--499634	10	3.3	10	91	8	57	0	9	0	90	0.45
507604--507908	154	2.0	151	92	5	517	15	21	18	45	1.85
511500--511545	23	2.0	23	86	0	65	2	21	8	67	1.29
512021--512123	3	34.7	3	88	1	154	64	0	1	33	1.05
512454--512530	21	3.8	21	75	13	88	20	19	25	33	1.96
512461--512592	40	3.2	40	88	4	201	22	18	22	36	1.95
512473--512585	21	5.4	21	66	13	72	23	18	21	37	1.94
512722--512754	6	5.5	6	100	0	66	33	51	15	0	1.43
513249--513284	10	3.3	11	92	7	56	0	16	55	27	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513246--513280	5	6.6	5	96	3	52	0	20	54	25	1.45
519012--519117	50	2.3	46	82	14	121	32	1	13	52	1.51
520687--520743	8	6.2	9	84	13	64	82	0	12	5	0.82
520688--520752	16	3.8	17	76	10	60	80	0	12	7	0.91
520674--520743	8	8.0	8	80	13	59	81	0	12	5	0.86
525618--525842	117	1.9	117	84	1	299	26	19	16	38	1.92
525548--526136	320	1.8	319	86	2	844	27	19	16	36	1.93
525939--526158	118	1.9	118	86	1	316	26	19	15	38	1.92
532232--532256	13	1.9	13	100	0	50	48	16	20	16	1.82
533207--533291	41	2.1	41	84	0	107	41	21	9	28	1.84

Tables:   1   2   3