Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005819.1 Hibiscus syriacus cultivar Beakdansim tig00013636_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  637054

Tables:   1   2   3   

This is table  3  of  3  ( 286 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
535412--535518
10
10.6
10
74
13
85
4
16
1
76
1.04
535437--535516
33
2.5
30
74
13
61
6
15
2
76
1.09
543450--543495
23
2.0
24
86
4
67
15
19
47
17
1.82
551358--551428
18
3.9
18
88
0
88
23
18
30
26
1.97
556567--556661
3
31.3
3
75
10
77
37
3
1
57
1.21
558074--558110
18
2.1
18
90
10
58
59
0
0
40
0.97
558259--558308
21
2.3
23
80
13
61
32
0
0
68
0.90
558172--558397
121
1.9
121
83
4
296
38
7
7
46
1.62
560515--560546
9
3.6
9
95
0
55
21
15
0
62
1.32
564763--564980
114
1.9
114
92
0
364
33
16
21
29
1.95
565159--565221
31
2.0
31
93
0
108
36
17
14
31
1.90
568419--568765
37
9.6
36
72
4
241
28
18
13
39
1.89
568419--568765
72
4.8
72
97
1
640
28
18
13
39
1.89
568764--568791
13
2.2
13
100
0
56
21
7
14
57
1.61
568943--569200
76
3.4
76
93
0
435
23
19
21
34
1.96
569357--569449
3
30.3
3
80
8
98
37
2
1
59
1.17
569367--569449
29
2.9
29
89
3
114
38
2
1
57
1.19
569367--569461
35
2.8
35
81
10
117
40
3
1
55
1.23
570866--570897
17
1.9
16
93
6
55
65
0
0
34
0.93
571058--571099
19
2.2
19
86
4
57
35
0
0
64
0.94
570962--571190
120
1.9
117
83
6
293
38
8
7
44
1.64
578176--578205
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
581863--581904
8
5.4
8
82
5
59
71
0
28
0
0.86
581863--581904
16
2.7
16
96
3
77
71
0
28
0
0.86
584011--584371
133
2.7
133
84
2
431
31
17
17
33
1.94
585752--585850
7
13.4
7
73
17
51
6
17
0
76
0.97
585761--585830
27
2.4
29
77
15
74
8
14
0
77
0.99
585789--585846
10
5.5
10
80
11
53
3
18
0
77
0.91
607479--608087
134
4.5
134
85
1
700
33
17
17
31
1.94
607479--608046
269
2.1
268
84
1
717
33
18
17
30
1.94
608685--608861
45
4.0
43
77
5
167
40
18
14
26
1.89
608722--609509
38
19.4
42
75
9
481
41
16
16
25
1.89
608787--609517
80
9.1
77
77
10
487
40
16
17
25
1.89
611350--611394
19
2.4
19
85
7
56
2
20
2
75
1.01
611352--611462
16
6.9
17
69
20
62
4
23
0
71
1.10
611391--611437
22
2.1
22
88
0
67
8
21
0
70
1.14
619358--619387
2
15.0
2
100
0
60
50
0
0
50
1.00
625192--625228
14
2.4
16
86
8
51
56
0
0
43
0.99
626757--626786
2
15.0
2
100
0
60
50
0
0
50
1.00
635759--635853
12
7.7
13
72
20
80
83
0
15
1
0.71
635762--635853
8
11.9
8
75
15
79
83
0
15
1
0.70
635759--635845
21
4.3
20
75
22
85
82
0
16
1
0.72
635762--635853
46
2.0
47
89
6
143
83
0
15
1
0.70
635761--635824
1
64.0
1
74
0
56
87
0
12
0
0.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
635764--635827
17
3.6
17
85
10
85
85
0
14
0
0.59
635759--635853
22
4.3
21
78
13
93
83
0
15
1
0.71

Tables:   1   2   3

The End!