genome.fa.s6094.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006094.1 Hibiscus syriacus cultivar Beakdansim tig00014445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761529

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 552 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
704201--704371	37	4.6	38	74	12	133	42	9	4	43	1.55
704760--704789	2	15.0	2	100	0	60	50	0	0	50	1.00
707600--707783	35	5.1	35	83	6	242	21	22	19	36	1.95
707600--707773	75	2.4	74	90	4	266	21	22	19	36	1.95
711721--711812	29	3.1	29	71	16	80	71	3	6	18	1.21
711720--711767	24	1.9	25	83	8	62	77	2	6	14	1.06
713530--714008	86	5.6	86	87	2	588	25	18	20	35	1.95
714146--714315	65	2.7	65	85	4	224	29	13	19	37	1.90
714423--714552	59	2.1	59	80	8	143	26	10	20	42	1.85
714290--714775	259	1.9	258	84	5	660	27	13	20	38	1.91
716147--716345	100	2.0	99	92	2	328	32	17	16	34	1.92
720375--720422	19	2.5	19	74	12	53	75	2	2	20	1.02
720509--720571	27	2.3	25	75	17	63	76	3	12	7	1.13
720595--720644	20	2.5	19	81	18	57	78	2	2	18	0.95
720595--720655	13	4.8	13	73	16	56	75	3	1	19	1.03
720620--720664	20	2.2	21	84	4	56	75	4	2	17	1.07
720702--720730	2	14.5	2	100	0	58	51	0	0	48	1.00
720699--720737	10	4.2	9	90	9	53	51	0	0	48	1.00
721812--721853	16	2.9	14	86	10	50	57	0	0	42	0.99
721830--721861	2	16.0	2	100	0	64	50	0	0	50	1.00
726140--726198	29	2.0	29	100	0	118	23	13	13	49	1.78
730824--730882	29	2.0	29	100	0	118	23	13	13	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734418--734531	20	5.7	20	81	6	104	31	24	18	25	1.97
734415--734531	61	1.9	61	83	0	153	33	23	17	24	1.97
735095--735206	20	6.1	19	74	14	99	12	25	20	41	1.87
735116--735181	33	2.0	34	93	3	116	12	27	22	37	1.90
735095--735206	19	6.1	19	74	14	99	12	25	20	41	1.87
736463--736535	21	3.7	20	72	15	62	31	41	12	15	1.84
737329--737462	42	3.2	42	79	4	180	21	38	18	21	1.94
737435--737501	21	3.2	21	66	6	55	23	35	20	19	1.95
737297--737471	84	2.1	84	98	0	341	21	37	17	24	1.94
737297--737501	42	4.9	41	73	9	162	21	36	18	23	1.95
737297--737501	84	2.4	84	91	1	286	21	36	18	23	1.95
738860--738895	14	2.6	14	95	0	63	30	0	25	44	1.54
739013--739077	33	2.0	33	93	0	112	50	21	18	9	1.74
739094--739185	19	5.4	19	62	24	60	18	19	18	43	1.88
739092--739180	33	2.7	33	89	3	126	16	20	19	43	1.88
741481--741505	12	2.1	12	100	0	50	0	28	0	72	0.86
741680--741733	24	2.2	24	90	0	81	40	20	16	22	1.91
742492--742543	21	2.5	21	87	3	70	38	17	23	21	1.93
742570--742619	20	2.5	20	80	0	73	38	22	18	22	1.94
742833--742900	20	3.4	20	72	8	66	39	22	20	17	1.92
742817--742920	40	2.9	34	77	15	109	40	21	22	16	1.91
742950--742994	19	2.4	19	96	0	81	15	17	15	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
743131--743167	14	2.6	14	86	0	56	48	21	0	29	1.50
744913--744957	18	2.5	18	85	0	63	15	15	42	26	1.87
746274--746332	20	3.0	20	87	0	73	42	22	18	16	1.89
746827--746878	20	2.6	20	93	0	86	25	21	28	25	1.99
746887--746940	20	2.7	20	94	0	90	27	18	22	31	1.97
746806--746961	61	2.5	62	83	4	201	23	18	23	35	1.96
746929--746980	21	2.5	21	84	3	70	15	23	19	42	1.89
747574--747680	29	3.7	29	81	5	119	37	7	2	52	1.44
747749--747830	24	3.2	25	71	21	80	54	0	6	39	1.25
747751--747808	22	2.5	23	86	5	73	56	0	5	37	1.21
747701--747855	82	1.9	82	82	4	197	50	0	7	41	1.34
747913--748060	29	5.3	28	71	17	85	50	0	11	37	1.44
747705--748061	30	12.5	28	73	15	202	49	0	9	40	1.42
747741--748060	60	5.7	56	72	12	226	50	0	10	38	1.41
747705--748061	85	4.2	83	73	13	253	49	0	9	40	1.42
748048--748097	18	2.7	18	78	3	55	42	0	14	44	1.44
749960--750022	29	2.1	30	80	13	69	41	6	14	38	1.71
750810--750864	20	2.8	20	85	0	74	38	21	10	29	1.88
757921--758019	20	5.0	19	77	8	101	34	24	14	27	1.94
757921--758019	40	2.5	40	86	4	130	34	24	14	27	1.94
758022--758100	40	2.0	40	85	5	106	26	24	12	36	1.91
757962--758051	20	4.5	20	76	2	74	33	22	12	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757962--758139	60	3.0	58	78	6	160	30	21	12	34	1.91
758004--758135	20	6.6	20	67	11	74	26	22	12	37	1.90
758465--758595	20	6.6	20	85	1	156	24	10	25	39	1.87
758465--758683	60	3.6	60	75	5	176	27	11	23	36	1.90
758465--758595	40	3.3	39	88	1	172	24	10	25	39	1.87
758465--758677	20	10.6	20	76	11	102	27	12	23	36	1.91

Tables:   1   2   3   4   5

The End!