genome.fa.s6192.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006192.1 Hibiscus syriacus cultivar Beakdansim tig00014732_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  476961

Tables:   1   2   3   

This is table  1  of  3  ( 288 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--286	80	3.5	81	84	9	341	28	19	17	34	1.95
331--401	2	37.0	2	91	8	121	52	0	0	47	1.00
6169--6224	15	3.7	15	90	2	76	8	21	10	58	1.58
17250--17281	7	4.7	7	96	3	57	25	28	46	0	1.53
17674--17715	18	2.5	17	81	11	59	45	0	0	54	0.99
18249--18288	16	2.5	16	95	0	71	17	37	12	32	1.87
19281--19489	56	3.7	56	89	2	296	37	10	18	33	1.85
20080--20123	11	4.2	11	88	8	65	9	15	0	75	1.05
20080--20125	21	2.1	22	88	11	69	8	17	0	73	1.07
20712--20744	13	2.4	14	90	5	50	18	3	3	75	1.06
20747--20809	19	3.2	19	75	4	54	31	0	12	55	1.37
20625--20789	76	2.2	77	87	3	246	30	1	10	56	1.44
21432--21477	16	2.7	17	86	6	58	21	2	2	73	1.04
23223--23256	15	2.3	15	94	0	59	44	20	26	8	1.81
25204--25391	93	2.0	93	98	0	367	37	17	12	32	1.87
27192--27238	20	2.3	20	85	7	69	10	2	4	82	0.88
29022--29169	76	2.0	75	89	4	226	28	2	10	58	1.44
30449--30474	2	13.0	2	100	0	52	50	0	0	50	1.00
30478--30509	13	2.5	13	94	0	55	40	0	18	40	1.51
30500--30821	38	8.7	38	75	14	232	45	4	5	45	1.46
30486--30821	112	3.0	111	81	12	377	44	3	6	45	1.47
30635--30661	13	2.1	13	100	0	54	37	7	7	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30499--30820	74	4.3	72	78	11	271	45	4	5	45	1.45
30533--30816	72	3.8	69	74	18	179	45	4	5	45	1.45
32029--32075	18	2.6	18	86	3	58	12	6	6	74	1.20
32092--32128	2	18.5	2	100	0	74	48	0	0	51	1.00
32151--32231	27	3.2	26	76	18	89	14	8	1	75	1.10
34596--34647	21	2.4	22	80	6	61	46	7	34	11	1.69
36194--36437	95	2.7	94	81	10	269	29	18	19	31	1.96
37165--37641	110	4.5	110	84	6	613	35	22	18	24	1.96
37172--37641	210	2.2	213	84	5	612	35	22	18	24	1.96
37749--38072	80	4.0	80	84	3	423	30	25	19	24	1.98
37745--38081	164	2.1	164	92	0	559	31	26	18	23	1.98
38200--38254	27	2.0	27	89	6	85	41	5	5	47	1.49
38217--38290	38	2.0	37	84	7	96	44	4	4	47	1.41
38345--38379	11	3.0	11	91	8	52	22	0	0	77	0.78
39505--39555	2	25.5	2	100	0	102	49	0	0	50	1.00
39555--39594	19	2.1	19	86	9	55	10	7	7	75	1.20
39711--39756	18	2.8	16	75	12	56	19	4	0	76	0.96
41943--41991	22	2.2	22	96	0	89	42	10	16	30	1.81
43958--44167	83	2.5	83	86	0	305	28	15	24	31	1.96
43958--44166	41	5.0	41	69	9	156	28	15	24	31	1.96
46475--46508	16	2.1	16	89	10	52	44	2	2	50	1.32
52380--52464	42	2.0	43	86	2	118	34	18	17	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55432--55844	31	13.3	31	79	0	367	39	15	15	29	1.88
57250--57496	36	7.0	35	71	13	152	46	4	6	42	1.51
57251--57497	71	3.5	71	82	3	259	46	4	6	41	1.51
62127--62199	24	3.0	24	88	4	67	10	15	24	49	1.76
62137--62192	14	4.3	14	82	17	75	8	14	25	51	1.70
62138--62212	24	3.1	23	90	3	96	12	12	21	54	1.69
62940--63014	10	7.7	10	69	21	61	9	12	21	57	1.62
62946--63010	16	4.1	16	95	0	121	7	12	23	56	1.61
63080--63112	16	2.1	16	100	0	66	6	12	24	57	1.57
66415--66439	1	25.0	1	100	0	50	100	0	0	0	0.00
67467--67686	3	74.3	3	95	2	257	66	8	0	25	1.19
68127--68269	41	3.4	42	72	10	130	32	13	19	34	1.91
68424--68523	42	2.4	40	79	9	119	26	12	19	43	1.85
68444--68566	44	2.9	43	81	3	149	26	12	22	39	1.89
72858--72906	2	24.5	2	95	0	89	48	0	2	48	1.12
73157--73191	18	1.9	18	94	0	61	25	34	20	20	1.96
79655--79691	2	18.5	2	88	0	56	45	0	5	48	1.25
79943--79995	18	2.9	18	88	0	61	30	32	16	20	1.95
83302--83329	2	14.0	2	100	0	56	50	0	0	50	1.00
102044--102090	20	2.4	20	89	3	69	31	21	12	34	1.91
106638--106774	51	2.6	51	80	7	143	47	16	10	25	1.79
108937--109127	95	2.0	95	96	0	355	33	25	13	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120844--120872	3	10.0	3	92	7	51	68	0	0	31	0.89
121128--121152	2	12.5	2	100	0	50	48	0	0	52	1.00
121133--121221	41	2.1	41	87	2	124	51	4	1	42	1.29
121705--121787	43	2.0	41	84	9	107	45	4	9	39	1.58
121752--122057	38	7.9	38	86	8	386	45	3	6	44	1.45
121910--121934	2	12.5	2	100	0	50	52	0	0	48	1.00
121761--122136	159	2.4	156	83	12	462	46	3	6	44	1.44
122135--122220	4	21.2	4	81	17	90	20	3	2	73	1.10
122816--122864	25	2.0	25	84	8	64	26	0	0	73	0.83
122815--122847	11	3.1	11	82	8	50	27	0	0	72	0.85
122815--122862	21	2.4	19	83	13	53	27	0	0	72	0.84
122855--122894	20	2.0	20	90	0	62	15	10	2	72	1.21
122861--122901	20	2.0	20	85	0	55	19	12	2	65	1.36
122985--123011	6	4.5	6	100	0	54	44	0	0	55	0.99
123798--123838	14	3.1	14	73	20	52	24	7	0	68	1.15
124613--124661	22	2.2	23	82	10	66	12	8	4	75	1.16
124636--124685	25	2.0	25	84	7	66	14	8	2	76	1.10
124769--124797	12	2.3	13	94	5	51	31	0	0	68	0.89
122911--125303	890	2.7	890	85	6	3181	27	14	12	46	1.80
125388--125490	4	25.0	4	70	21	54	21	4	1	71	1.14
125434--125503	30	2.3	30	85	9	99	20	5	1	72	1.12
125388--125501	43	2.6	44	85	9	146	21	6	1	71	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125469--125501	15	2.1	16	88	11	50	18	6	0	75	1.00
126565--126595	15	2.0	16	93	6	55	6	22	0	70	1.09
130834--131422	85	6.9	84	83	4	637	35	19	18	26	1.94
130834--131405	252	2.2	254	82	4	679	36	19	18	26	1.94
131342--131658	176	1.8	174	84	5	442	31	17	21	28	1.97
132363--132619	37	6.7	38	83	9	317	46	3	5	43	1.45
132311--132589	78	3.5	78	85	6	341	45	3	5	45	1.45
132363--132628	79	3.5	74	85	8	279	45	3	6	44	1.46
132676--132719	17	2.5	17	82	13	54	20	2	0	77	0.88
132754--132800	17	2.8	17	86	0	67	29	25	23	21	1.99
142419--142484	32	2.2	30	82	15	82	34	16	19	28	1.94
142427--142513	32	2.7	31	89	5	129	29	16	21	32	1.95
142611--142717	34	3.1	34	89	0	160	32	20	8	38	1.83
143362--143568	86	2.4	84	82	4	236	29	28	15	25	1.96
143456--143748	121	2.4	123	83	5	351	28	29	16	25	1.97
143737--143925	47	4.0	47	96	1	342	30	23	16	30	1.96
143737--143925	95	2.0	95	96	0	351	30	23	16	30	1.96
144895--144923	5	5.8	5	100	0	58	17	0	0	82	0.66
145497--145524	13	2.2	13	100	0	56	50	7	7	35	1.57
154896--154927	12	2.7	12	95	0	55	71	9	18	0	1.12
154897--154949	19	2.7	20	70	5	54	69	9	20	0	1.15
155971--156057	32	2.8	32	91	1	131	32	16	19	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156148--156260	34	3.3	34	87	2	165	35	20	7	36	1.82
156915--157109	86	2.3	86	86	3	268	30	27	16	25	1.97
156996--157240	122	2.0	123	91	0	393	28	29	16	25	1.97
157280--157466	47	4.0	47	94	1	320	31	22	15	30	1.95
157280--157464	95	1.9	95	94	0	325	31	22	15	29	1.95
157661--157688	3	9.3	3	100	0	56	35	0	0	64	0.94
159115--159167	21	2.5	21	81	9	63	9	7	1	81	0.96
159097--159193	49	2.0	49	81	6	115	18	6	2	73	1.14
159270--159308	19	2.0	19	85	5	51	35	0	7	56	1.28
160777--160821	3	15.0	3	100	0	90	33	0	0	66	0.92

Tables:   1   2   3