Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006192.1 Hibiscus syriacus cultivar Beakdansim tig00014732_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  476961

Tables:   1   2   3   

This is table  3  of  3  ( 288 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
371996--372345
53
6.6
55
76
9
237
33
10
15
40
1.81
372194--372400
53
3.9
53
81
5
258
33
8
17
40
1.80
372718--372833
36
3.2
36
67
7
108
33
21
12
31
1.91
372735--372851
37
3.2
36
67
11
94
34
20
12
32
1.91
372845--372958
34
3.2
34
67
9
93
27
19
14
39
1.90
372651--373063
144
2.8
146
85
5
543
30
20
11
37
1.88
372680--373084
73
5.5
73
85
5
446
31
20
11
36
1.88
373348--373655
141
2.2
139
85
2
420
36
17
19
26
1.94
388300--388357
13
4.3
13
81
12
64
74
0
17
8
1.06
388297--388442
40
3.7
41
75
12
119
72
0
15
11
1.12
388301--388416
7
16.7
7
76
20
95
72
0
15
12
1.12
389789--390209
55
7.7
54
81
7
367
28
17
23
30
1.97
389789--390209
110
3.9
110
80
9
432
28
17
23
30
1.97
389783--390202
161
2.6
160
80
8
431
28
16
24
30
1.97
390275--390624
174
2.0
176
98
1
686
30
26
21
22
1.99
390739--390783
21
2.1
21
91
0
72
44
13
28
13
1.81
394405--394443
20
1.9
21
84
5
53
58
2
2
35
1.25
396557--396597
21
2.0
20
86
13
57
51
0
0
48
1.00
396544--396598
24
2.4
24
80
16
64
52
0
0
47
1.00
397107--397169
25
2.6
25
79
2
74
34
1
3
60
1.22
400755--400806
27
2.0
27
88
7
81
50
0
0
50
1.00
404711--404740
5
6.0
5
100
0
60
60
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
404705--404738
15
2.3
15
89
0
50
64
0
2
32
1.08
418566--418643
5
16.0
5
81
7
81
76
3
2
16
1.04
418752--418795
16
2.6
17
82
10
54
77
2
4
15
1.04
418904--418929
11
2.4
11
100
0
52
69
0
7
23
1.14
422014--422380
187
2.0
186
99
0
725
45
15
8
30
1.76
424631--424885
36
6.8
36
67
7
141
41
11
16
30
1.84
424614--424907
75
3.9
75
86
1
383
40
11
17
30
1.85
424877--424967
38
2.4
38
85
3
130
37
12
19
30
1.88
425787--426242
89
5.1
89
91
0
637
33
21
6
38
1.80
425787--426242
44
10.3
44
87
1
588
33
21
6
38
1.80
426401--426554
57
2.6
59
82
9
181
31
24
13
30
1.93
426401--426537
57
2.3
59
86
3
188
29
25
14
30
1.95
426599--426942
177
1.9
177
88
2
521
30
21
10
37
1.87
426519--426940
118
3.6
118
86
2
528
29
21
11
37
1.88
426519--426949
59
7.3
57
80
6
434
29
21
11
37
1.88
429511--429580
28
2.5
28
92
0
113
35
28
20
15
1.93
431486--431550
31
2.1
31
85
5
87
23
18
21
36
1.95
431501--431584
30
2.8
29
80
10
80
21
17
26
34
1.96
431536--431607
29
2.4
30
88
2
101
16
18
30
34
1.93
431807--431853
23
2.0
22
84
15
60
31
2
19
46
1.61
438324--438430
28
3.8
28
89
0
169
38
28
18
14
1.91
450149--450174
13
2.0
13
100
0
52
61
7
0
30
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
459181--459468
144
2.0
144
87
1
416
33
10
25
31
1.89
463344--463378
18
1.9
18
88
0
52
42
0
2
54
1.15
463722--463775
22
2.5
21
82
11
65
25
0
5
68
1.11
476116--476156
6
6.8
6
94
0
73
34
53
12
0
1.38

Tables:   1   2   3

The End!