genome.fa.s6192.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006192.1 Hibiscus syriacus cultivar Beakdansim tig00014732_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  476961

Tables:   1   2   3   

This is table  2  of  3  ( 288 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161250--161295	24	1.9	24	82	8	58	65	0	30	4	1.12
161563--161602	2	20.5	2	89	5	64	0	45	0	55	0.99
182170--182217	24	2.0	24	100	0	96	8	12	33	45	1.72
190542--190603	22	2.8	22	82	2	70	22	29	22	25	1.99
192296--192320	13	1.9	13	100	0	50	40	0	16	44	1.47
204618--204868	91	2.8	91	86	0	331	24	21	15	37	1.93
204617--204895	91	3.1	91	84	1	272	24	21	17	36	1.94
207697--208010	40	7.9	40	80	5	296	35	15	16	31	1.91
207697--208002	119	2.6	117	83	5	355	35	15	16	32	1.90
208240--208325	38	2.2	39	85	4	120	36	17	12	33	1.88
214136--214178	5	7.8	5	87	10	50	76	2	0	20	0.89
215562--215615	3	18.3	3	88	3	83	61	0	0	38	0.96
217335--217407	31	2.4	31	85	0	101	30	16	23	30	1.96
217393--217462	30	2.3	30	85	2	86	31	25	8	34	1.86
217532--217565	13	2.7	13	95	4	61	0	35	0	64	0.94
218074--218714	325	2.0	325	90	2	1020	41	8	9	41	1.67
220802--220846	21	2.1	21	87	0	63	31	28	24	15	1.96
222379--222699	103	3.1	103	97	0	606	25	13	23	37	1.91
222715--222767	23	2.3	23	86	0	79	20	24	26	28	1.99
224098--224125	8	3.5	8	100	0	56	89	0	0	10	0.49
224391--224435	10	4.1	10	79	20	54	11	11	20	57	1.63
224374--224445	24	3.0	24	89	0	72	13	13	20	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225523--225589	16	4.3	16	92	3	111	11	10	17	59	1.60
225654--225684	16	1.9	16	100	0	62	9	12	19	58	1.62
230806--230869	34	1.9	33	87	9	94	40	0	10	48	1.38
230840--230904	28	2.4	27	75	10	69	40	0	6	53	1.26
230857--230900	23	1.9	23	86	9	63	36	0	4	59	1.18
233654--233679	11	2.4	11	100	0	52	57	7	7	26	1.54
234871--234910	21	2.0	21	85	9	57	57	2	30	10	1.45
240410--240646	102	2.3	102	86	2	325	28	17	12	41	1.86
240531--240811	66	4.2	67	88	3	381	29	17	11	41	1.85
240557--240843	133	2.2	133	90	2	443	28	17	13	40	1.88
240557--240843	66	4.3	67	86	4	375	28	17	13	40	1.88
240416--240779	36	10.8	36	65	15	150	29	17	12	40	1.86
240557--240876	133	2.4	132	86	6	389	29	17	13	39	1.88
240859--241102	102	2.4	102	83	2	272	34	16	13	36	1.88
241029--241088	29	2.1	29	81	6	68	35	15	11	38	1.83
243004--243062	29	2.0	29	90	0	91	30	13	11	44	1.80
246550--246611	12	5.2	12	75	7	56	30	1	0	67	1.00
246558--246612	20	2.7	21	80	2	67	32	0	0	67	0.91
247998--248042	11	4.0	11	88	2	63	24	4	0	71	1.05
247999--248042	22	2.0	23	90	4	72	22	4	0	72	1.02
248149--248250	45	2.2	47	79	8	104	42	1	1	53	1.23
248084--248366	152	1.9	150	88	2	426	40	5	7	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248632--248667	2	18.0	2	100	0	72	50	0	0	50	1.00
249849--249881	14	2.4	14	94	0	57	15	3	0	81	0.80
249983--250022	22	1.9	19	85	14	53	37	7	12	42	1.71
251580--251629	6	7.7	6	80	12	55	16	18	12	54	1.72
251588--251628	21	2.0	21	95	0	73	14	17	12	56	1.68
251713--251762	6	7.4	7	89	10	70	14	16	14	56	1.69
251713--251807	14	7.1	13	77	13	86	16	14	12	55	1.69
257844--257900	22	2.6	22	88	0	87	33	14	12	40	1.83
258607--258748	76	1.9	74	92	5	241	21	22	20	35	1.96
258682--259029	45	7.7	45	91	0	543	22	22	19	35	1.96
259208--259260	3	18.0	3	80	3	63	32	0	1	66	1.03
260747--260798	2	26.0	2	96	0	95	51	0	0	48	1.00
268740--268791	20	2.6	20	75	6	52	34	7	23	34	1.83
268874--268927	22	2.5	22	82	5	67	29	18	20	31	1.96
274109--274140	16	2.0	16	93	0	55	40	18	0	40	1.51
274595--274640	22	2.1	22	91	0	74	17	32	15	34	1.91
277604--277652	24	2.0	24	100	0	98	26	28	16	28	1.97
285034--285097	34	1.9	33	93	3	110	40	0	9	50	1.35
285212--285288	28	2.7	27	75	14	75	40	1	1	57	1.15
285240--285282	18	2.5	17	82	14	52	46	0	0	53	1.00
291313--291398	46	1.9	44	86	9	120	31	12	16	39	1.86
300759--300792	18	1.9	17	88	5	50	44	2	0	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300795--300880	43	2.0	42	86	8	122	51	0	3	45	1.18
300914--300974	10	5.5	12	75	16	69	62	0	0	37	0.96
300920--300982	9	6.2	9	75	22	54	61	0	0	38	0.96
300910--300982	22	3.4	22	96	3	132	61	0	0	38	0.96
300910--300974	12	5.8	12	77	15	77	63	0	0	36	0.95
301046--301085	18	2.3	17	91	4	62	40	0	0	60	0.97
301038--301076	18	2.1	19	90	4	62	38	0	0	61	0.96
301097--301129	16	2.0	17	88	5	50	51	0	0	48	1.00
301355--301383	2	14.5	2	100	0	58	51	0	0	48	1.00
301424--301451	2	14.0	2	100	0	56	50	0	0	50	1.00
301668--301699	14	2.4	13	90	10	55	81	0	0	18	0.70
305141--305225	33	2.6	32	80	7	91	14	30	36	18	1.91
309062--309425	130	2.8	132	82	4	378	35	10	14	39	1.80
309062--309441	45	8.6	45	81	5	371	35	10	15	39	1.80
309608--309793	58	3.2	58	93	0	309	37	8	12	41	1.73
318103--318200	49	2.0	49	86	4	135	30	4	20	44	1.70
319661--319717	22	2.6	21	83	8	69	31	0	0	68	0.90
324871--325600	105	7.0	105	92	1	1130	32	25	18	23	1.97
326080--326136	22	2.6	21	83	8	69	31	0	0	68	0.90
339253--339314	23	2.9	21	85	7	81	20	35	25	17	1.95
339296--339335	21	1.9	21	89	0	62	25	40	25	10	1.86
343770--344045	137	2.0	139	98	1	538	49	13	17	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344847--345099	128	2.0	127	82	3	303	28	14	22	33	1.94
345631--345726	47	2.0	47	100	0	192	35	14	8	41	1.76
347231--347392	27	6.5	27	70	20	147	21	23	12	42	1.87
347259--347425	47	3.6	47	93	0	280	21	22	11	43	1.85
347285--347365	20	3.7	20	72	20	72	19	27	12	40	1.87
350826--350969	45	3.3	42	80	12	157	41	8	19	30	1.81
350843--350969	45	2.8	44	85	7	166	40	8	18	31	1.81
354226--354266	19	2.2	19	90	0	64	14	26	17	41	1.88
357060--357136	20	3.5	20	73	21	73	18	28	11	41	1.85
357076--357196	20	5.0	27	67	28	101	22	23	10	42	1.85
357060--357197	47	2.9	47	93	0	231	22	24	10	42	1.84
357679--357736	22	2.8	20	82	14	73	24	25	15	34	1.95
358982--359039	29	2.0	29	93	0	98	39	18	15	25	1.91
359734--359817	12	6.8	12	73	20	66	4	15	1	78	0.98
359747--359810	20	3.2	20	82	10	76	3	15	1	79	0.93
359743--359801	28	2.0	30	83	6	77	5	18	0	76	0.97
359747--359803	18	3.1	18	87	10	71	3	17	0	78	0.88
359755--359817	12	5.3	12	83	10	69	1	14	1	82	0.82
359755--359817	18	3.6	18	81	12	69	1	14	1	82	0.82
359789--359829	18	2.3	18	87	4	57	4	9	2	82	0.89
361363--361395	10	3.4	10	87	8	50	60	0	21	18	1.36
363303--363333	15	2.1	15	93	0	53	64	0	3	32	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365369--365432	15	4.3	15	69	15	53	32	4	3	59	1.34
366668--366743	20	4.0	20	76	11	79	1	19	0	78	0.81
366660--366759	36	2.7	35	81	6	101	5	18	0	77	0.95
366674--366763	10	8.9	10	73	8	67	3	17	0	78	0.88
366661--366763	26	3.6	30	76	16	85	3	17	0	78	0.89
367503--367539	19	1.9	19	94	0	65	29	2	21	45	1.65
367242--367834	295	2.0	295	98	0	1150	29	11	21	37	1.89
367798--367835	19	2.0	19	94	0	67	36	2	15	44	1.61
370673--370740	28	2.4	28	85	0	91	42	29	2	25	1.69
371996--372179	55	3.3	55	80	6	201	32	11	14	41	1.82

Tables:   1   2   3