genome.fa.s6206.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006206.1 Hibiscus syriacus cultivar Beakdansim tig00014773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  480835

Tables:   1   2   3   

This is table  1  of  3  ( 279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1131--1194	31	2.1	31	87	0	92	57	6	18	17	1.60
13512--13575	31	2.0	32	96	3	121	51	18	3	26	1.61
21504--21580	39	2.0	39	97	0	145	31	14	15	38	1.87
23117--23262	44	3.3	44	93	0	229	18	8	22	50	1.75
26017--26063	16	2.9	16	77	0	58	53	19	14	12	1.73
27129--27190	24	2.6	24	87	5	81	53	19	14	12	1.73
27149--27200	24	2.2	24	85	0	68	46	25	17	11	1.81
37693--37764	32	2.3	32	82	2	83	19	25	11	44	1.83
40016--40082	34	2.0	34	85	11	93	55	0	4	40	1.20
41344--41386	2	22.0	2	85	4	61	48	2	2	46	1.27
41669--42233	105	5.4	105	97	0	1031	23	17	24	34	1.96
43005--43129	64	2.0	64	82	6	155	11	23	10	55	1.66
43069--43096	11	2.5	11	100	0	56	0	10	0	89	0.49
45204--45240	10	3.7	10	88	0	56	81	0	0	18	0.70
45203--45236	16	2.1	16	88	0	50	82	0	0	17	0.67
47766--47836	2	36.0	2	94	2	126	49	0	1	49	1.09
50015--50065	26	2.0	26	92	0	84	41	21	15	21	1.90
56271--56401	69	1.9	69	87	7	194	33	15	12	38	1.84
56868--56913	22	2.0	22	83	4	56	15	10	10	63	1.53
59928--60014	18	4.8	18	72	0	66	24	19	32	24	1.98
60628--60678	18	2.9	17	74	5	57	52	5	3	37	1.44
60725--60798	28	2.6	28	80	4	85	58	8	8	25	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63539--63599	31	2.0	31	96	0	113	65	14	1	18	1.35
63590--63693	4	26.0	4	66	11	52	63	3	4	27	1.32
63579--63693	23	5.0	23	76	4	115	63	3	4	28	1.30
63590--63658	27	2.6	26	84	9	77	63	2	5	27	1.31
63642--63693	19	2.7	20	79	5	63	67	3	1	26	1.18
64336--64433	20	4.8	20	80	7	99	32	24	18	24	1.97
64330--64466	61	2.3	60	80	1	157	34	23	16	25	1.95
64395--64447	20	2.7	20	90	0	79	26	28	18	26	1.98
64941--64999	20	3.0	20	87	0	73	16	18	22	42	1.89
65136--65190	25	2.2	24	78	15	58	20	9	18	52	1.71
66319--66363	18	2.5	18	88	0	72	26	44	15	13	1.83
66845--66890	20	2.3	20	88	0	65	36	26	21	15	1.93
66900--66957	14	3.9	14	79	16	71	48	24	17	10	1.78
66884--66974	32	2.8	33	93	3	157	47	20	18	13	1.82
66845--66979	19	7.6	19	70	19	67	42	22	20	14	1.87
67016--67071	20	2.8	20	86	7	71	16	23	23	37	1.93
68729--68767	20	2.0	20	94	0	69	46	30	10	12	1.75
68760--68813	14	3.5	14	75	22	54	46	20	22	11	1.82
68773--68818	14	2.8	17	75	25	53	45	19	21	13	1.84
68844--68894	20	2.5	20	93	0	93	15	21	27	35	1.94
69107--69157	20	2.5	20	96	0	93	19	31	17	31	1.95
70130--70154	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71651--71781	19	7.7	19	67	23	103	42	19	22	15	1.88
71651--71777	33	3.8	33	88	4	202	42	19	22	15	1.89
71652--71784	66	2.0	66	97	0	248	41	19	21	17	1.90
71786--71866	33	2.5	33	93	0	135	12	23	18	45	1.83
71806--71866	19	3.5	19	65	21	51	13	22	18	45	1.83
71973--72009	14	2.6	14	91	0	65	45	24	0	29	1.53
73365--73570	42	4.9	41	71	10	148	23	17	35	22	1.95
73395--73570	84	2.1	84	95	0	316	24	17	36	22	1.94
73787--73973	91	2.0	90	91	6	304	47	19	12	21	1.82
74117--74258	63	2.3	63	87	2	160	27	36	16	19	1.93
74140--74270	63	2.1	63	97	0	244	24	36	17	21	1.94
75723--75862	19	7.8	19	70	19	113	46	18	22	12	1.83
75748--75812	33	2.0	33	87	0	94	43	21	23	12	1.86
75731--75867	52	2.6	52	87	3	186	44	19	22	13	1.85
75863--75907	19	2.4	19	88	0	63	8	13	26	51	1.70
76452--76504	20	2.7	20	93	0	88	26	20	28	24	1.99
76513--76566	20	2.7	20	97	0	99	25	18	24	31	1.97
76453--76569	61	1.9	61	85	0	162	23	17	24	33	1.97
76453--76587	61	2.2	61	81	2	155	22	20	24	32	1.98
76637--76677	21	2.0	21	85	0	55	36	31	14	17	1.90
76815--76843	2	14.5	2	100	0	58	51	0	0	48	1.00
79737--79859	60	2.0	60	81	3	140	33	16	5	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79753--80195	220	2.0	220	97	0	832	32	15	11	41	1.82
88730--88793	2	32.0	2	100	0	128	50	0	0	50	1.00
91727--91780	20	2.7	20	82	0	72	31	27	14	25	1.95
96630--96669	18	2.3	18	86	4	55	50	10	0	40	1.36
100339--100394	24	2.3	24	96	0	103	32	19	8	39	1.83
101814--101861	2	24.0	2	100	0	96	50	0	0	50	1.00
104674--104698	2	12.5	2	100	0	50	52	0	0	48	1.00
105846--105873	14	2.0	14	100	0	56	14	21	14	50	1.78
107632--107732	51	2.0	51	96	0	184	31	21	11	34	1.90
109957--109984	14	2.0	14	100	0	56	14	21	14	50	1.78
117368--117426	28	2.1	27	87	3	82	62	6	18	11	1.50
130994--131353	198	1.8	199	86	0	524	35	18	14	31	1.91
137490--137526	2	18.5	2	100	0	74	48	0	0	51	1.00
137983--138043	31	2.0	31	86	0	86	47	4	3	44	1.41
142029--142136	31	3.6	30	76	10	105	42	8	9	39	1.67
150380--150756	55	7.0	53	75	14	221	31	23	16	29	1.96
150459--151085	51	12.0	51	87	5	718	28	25	16	29	1.96
152214--152261	16	3.2	14	80	13	51	8	12	0	79	0.94
152219--152302	16	5.2	16	80	12	75	4	16	2	76	1.07
152225--152292	8	8.8	8	77	18	63	5	14	1	77	1.02
152226--152291	23	2.9	22	84	11	71	6	15	1	77	1.04
152226--152283	15	3.8	15	82	15	66	6	15	0	77	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168097--168155	25	2.2	27	85	8	77	37	3	0	59	1.14
168143--168179	18	1.9	19	89	10	58	51	0	2	45	1.15
169450--169542	21	4.5	21	75	4	91	40	18	23	17	1.90
169453--169542	41	2.2	41	97	0	171	42	17	23	16	1.89
169469--169603	41	3.3	41	81	6	123	39	20	20	19	1.93
169531--169625	20	4.7	20	80	2	91	34	24	17	23	1.96
171465--171509	18	2.5	18	88	0	72	26	44	15	13	1.83
171993--172048	20	2.8	20	81	2	69	39	21	23	16	1.92
172037--172094	14	3.9	14	79	16	71	48	24	17	10	1.78
172021--172111	32	2.8	33	94	3	166	47	21	18	12	1.81
172021--172116	19	5.6	19	69	25	88	45	21	19	12	1.83
172128--172185	14	3.9	14	79	16	71	8	17	25	48	1.75
172123--172201	32	2.4	33	95	2	142	10	18	24	46	1.80
172144--172243	19	5.5	19	77	12	77	14	21	22	43	1.87
172186--172240	20	2.8	19	89	5	83	18	25	21	34	1.96
174250--174317	19	3.8	19	85	14	101	47	17	22	13	1.82
174336--174413	20	3.9	20	96	0	138	16	23	23	37	1.94
175468--175521	24	2.2	24	90	0	81	24	16	20	38	1.92
178001--178130	19	7.7	19	66	25	94	43	20	23	13	1.87
178001--178126	33	3.8	33	90	2	209	42	19	23	14	1.88
178002--178132	65	2.0	65	96	0	244	41	19	22	15	1.89
178289--178325	14	2.6	14	91	0	65	45	24	0	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179678--179744	21	3.2	21	68	4	55	19	20	35	23	1.95
179678--179800	42	2.9	41	79	7	104	23	17	35	22	1.95
181826--181924	33	3.0	33	89	1	144	39	26	23	11	1.88
181801--181984	19	10.1	19	77	15	174	43	22	22	11	1.85
182596--182696	20	4.9	21	71	12	59	18	19	18	42	1.89
182559--182652	20	4.7	20	78	2	80	24	18	23	34	1.96
182575--182714	41	3.4	42	81	3	144	20	21	20	37	1.94
182641--182733	20	4.6	20	78	4	96	17	24	18	39	1.91
182641--182733	41	2.3	41	100	0	186	17	24	18	39	1.91
192178--192384	85	2.5	84	79	9	224	27	15	17	39	1.90

Tables:   1   2   3