genome.fa.s6206.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006206.1 Hibiscus syriacus cultivar Beakdansim tig00014773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  480835

Tables:   1   2   3   

This is table  3  of  3  ( 279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420073--420107	12	2.8	13	91	8	63	48	8	5	37	1.58
422811--423144	161	2.1	162	86	2	474	30	13	11	44	1.78
422972--423372	183	2.2	183	88	0	588	29	12	12	45	1.79
427679--427728	16	2.7	19	79	20	61	26	12	12	50	1.74
427696--427728	16	2.1	16	100	0	66	24	12	12	51	1.73
428142--428196	20	2.8	20	97	0	101	23	10	12	52	1.71
428186--428519	181	1.8	181	90	2	546	41	13	13	32	1.83
431846--431875	14	2.1	14	93	0	51	23	26	6	43	1.78
432989--433071	34	2.5	34	98	2	159	25	13	9	51	1.70
433278--433399	36	3.4	36	95	1	219	38	11	16	33	1.84
437268--437296	15	1.9	15	100	0	58	55	3	0	41	1.17
437436--437499	14	4.1	14	73	21	56	21	9	25	43	1.82
437434--437500	34	2.0	34	96	0	125	22	8	25	43	1.82
438596--438672	40	1.9	40	81	5	93	35	19	15	29	1.93
440591--441015	35	11.9	35	85	7	572	42	10	3	43	1.55
440592--441015	71	5.9	70	86	6	561	42	10	3	43	1.55
440591--441015	144	3.0	141	87	5	597	42	10	3	43	1.55
440980--441028	23	2.1	23	96	0	89	38	10	4	46	1.57
442665--442697	14	2.4	14	94	0	57	24	39	30	6	1.79
442679--442762	33	2.5	33	90	0	123	27	27	36	8	1.85
442765--442833	29	2.3	30	85	5	104	20	30	33	15	1.94
442855--442937	33	2.6	32	86	7	114	8	36	28	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442938--442991	20	2.7	20	91	0	81	12	25	35	25	1.92
443534--443566	2	16.5	2	93	0	57	51	0	0	48	1.00
444279--444652	186	2.0	187	95	1	678	43	19	12	25	1.86
444925--445008	43	2.0	43	83	4	107	35	10	23	29	1.89
446268--446338	31	2.3	31	100	0	142	33	23	29	12	1.92
449889--449926	20	1.9	20	88	0	58	21	26	10	42	1.85
457708--457733	12	2.2	12	100	0	52	23	0	53	23	1.46
458404--458488	20	4.0	20	70	22	66	14	24	35	25	1.93
472149--472183	11	3.3	11	88	8	54	40	8	34	17	1.80
473502--473539	14	2.7	14	87	0	58	34	0	0	65	0.93
474241--474312	17	4.2	16	81	12	81	38	13	8	38	1.75
474714--474793	25	3.2	25	94	0	142	35	22	17	25	1.95
477612--477667	16	3.4	16	80	11	69	46	1	0	51	1.11
479216--479308	3	31.0	3	84	0	114	59	0	1	39	1.05
479216--479308	24	3.9	24	89	0	132	59	0	1	39	1.05
479617--480185	223	2.5	222	88	5	846	28	19	15	37	1.92
479617--480185	112	5.1	113	89	4	818	28	19	15	37	1.92

Tables:   1   2   3

The End!