genome.fa.s6206.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006206.1 Hibiscus syriacus cultivar Beakdansim tig00014773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  480835

Tables:   1   2   3   

This is table  2  of  3  ( 279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198765--198840	31	2.4	31	80	2	89	26	31	27	14	1.95
198718--198840	63	2.0	63	82	6	151	25	29	28	17	1.97
201651--201697	17	2.9	16	87	12	69	25	25	36	12	1.92
201651--201699	8	6.1	8	84	15	66	24	26	34	14	1.94
201694--201719	5	5.2	5	100	0	52	0	23	57	19	1.40
201672--201758	13	6.3	13	75	9	66	17	19	44	18	1.87
205961--206019	3	19.3	3	82	3	73	32	3	1	62	1.21
213705--213756	17	3.2	17	75	10	54	32	3	13	50	1.60
224587--224617	16	1.9	16	100	0	62	25	32	9	32	1.88
226253--226292	2	20.0	2	100	0	80	50	0	0	50	1.00
228784--228815	2	16.0	2	100	0	64	50	0	0	50	1.00
230929--230953	11	2.3	11	100	0	50	36	0	0	64	0.94
231086--231136	24	2.1	24	82	13	61	23	0	1	74	0.92
231087--231140	16	3.4	16	71	21	51	24	0	1	74	0.92
231086--231145	12	4.8	12	78	13	52	26	0	1	71	0.95
232801--232841	21	2.0	21	85	0	55	26	29	19	24	1.98
233374--233435	14	4.5	14	78	11	65	20	0	12	66	1.25
233406--233476	23	3.1	23	78	13	76	21	1	9	67	1.27
234934--235001	32	2.2	32	83	2	93	44	5	5	44	1.52
245017--245070	2	27.0	2	88	0	81	44	0	5	50	1.25
249231--249282	24	2.2	24	82	3	61	9	40	21	28	1.84
271273--272061	392	2.0	392	98	0	1524	20	28	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275341--275391	20	2.5	21	81	12	61	23	19	19	37	1.94
276531--276600	34	2.1	32	86	5	95	20	32	15	31	1.94
276884--276925	21	2.0	21	100	0	84	28	28	19	23	1.98
277031--277077	19	2.5	19	85	0	58	36	14	10	38	1.81
277142--277201	29	2.0	31	90	6	97	41	16	6	35	1.75
278453--278500	19	2.5	20	82	3	62	29	12	6	52	1.63
279360--279429	34	2.1	32	86	5	95	20	32	15	31	1.94
279713--279754	21	2.0	21	100	0	84	28	28	19	23	1.98
279860--279906	19	2.5	19	85	0	58	36	14	10	38	1.81
279971--280030	29	2.0	31	90	6	97	41	16	6	35	1.75
281277--281324	19	2.5	20	82	3	62	29	12	6	52	1.63
282181--282250	34	2.1	32	86	5	95	21	32	15	30	1.94
282534--282574	21	2.0	21	95	4	75	26	29	19	24	1.98
282678--282724	19	2.5	19	85	0	58	36	14	10	38	1.81
284490--284531	22	2.0	21	86	9	59	28	28	16	26	1.97
284745--284804	29	2.0	31	90	6	97	41	16	6	35	1.75
286969--287034	21	3.2	21	87	8	100	22	33	18	25	1.97
286978--287019	19	2.2	19	100	0	84	19	33	19	28	1.96
288350--288389	21	2.0	21	95	5	73	40	7	22	30	1.81
290997--291047	26	2.0	26	100	0	102	47	11	11	29	1.76
294032--294088	24	2.4	24	78	0	60	33	0	7	59	1.24
296188--296231	17	2.6	17	82	7	54	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297596--297649	27	2.0	27	100	0	108	44	11	18	25	1.83
301111--301271	64	2.5	63	84	7	182	33	18	21	27	1.96
302439--302543	31	3.4	31	90	2	140	30	18	19	32	1.95
302456--302562	31	3.5	31	92	0	151	30	17	21	29	1.96
305810--305970	64	2.5	63	85	7	191	34	18	21	26	1.96
306460--306492	2	16.5	2	93	0	57	51	3	0	45	1.16
307167--307254	31	2.8	31	96	0	158	32	17	19	30	1.94
307265--307331	30	2.2	30	97	0	125	23	19	25	31	1.98
308138--308185	21	2.3	21	92	0	78	39	14	18	27	1.90
311081--311168	29	3.0	29	98	0	167	44	13	13	28	1.82
312117--312173	21	2.7	21	91	0	96	7	31	40	21	1.80
313199--313507	120	2.5	120	82	9	359	12	30	7	50	1.66
313199--313507	63	5.0	63	84	5	387	12	30	7	50	1.66
314475--314628	63	2.4	63	91	4	240	50	7	31	11	1.65
314508--314652	63	2.4	58	85	13	213	52	8	31	6	1.59
316388--316419	4	8.0	4	100	0	64	25	0	0	75	0.81
319895--319923	4	7.2	4	100	0	58	72	0	27	0	0.85
321289--321313	6	4.2	6	100	0	50	64	20	16	0	1.30
323466--323518	25	2.1	25	100	0	106	35	13	15	35	1.86
326012--326040	2	14.5	2	100	0	58	48	0	0	51	1.00
326326--326368	13	3.5	13	76	23	56	39	9	0	51	1.34
326316--326370	24	2.3	24	96	3	103	41	7	0	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327057--327090	17	1.9	17	88	5	50	73	2	8	14	1.19
336993--337050	29	2.2	25	72	21	62	10	17	18	53	1.71
336999--337060	29	2.1	29	96	0	115	6	14	24	54	1.63
338007--338075	21	3.4	21	66	8	61	42	4	28	24	1.74
337995--338071	40	1.9	40	94	0	136	40	5	27	27	1.77
354070--354114	17	2.5	19	82	7	58	8	22	48	20	1.76
354058--354101	22	2.0	22	95	0	79	9	25	47	18	1.77
354111--354160	9	5.3	9	79	9	55	28	28	30	14	1.95
361420--361457	17	2.2	17	100	0	76	10	28	42	18	1.83
371894--371986	21	4.5	21	78	4	100	39	18	24	17	1.91
371894--371986	41	2.3	41	100	0	186	39	18	24	17	1.91
371913--372047	41	3.3	41	82	6	132	38	20	21	19	1.94
371975--372089	20	5.7	20	82	2	113	32	25	18	24	1.97
371972--372109	41	3.4	41	78	2	143	34	23	17	23	1.96
372277--372320	22	2.0	22	95	0	79	25	45	11	18	1.82
372598--372640	20	2.2	20	95	0	77	9	18	18	53	1.70
373958--374002	18	2.5	18	88	0	72	26	44	15	13	1.83
374533--374590	14	3.9	14	81	16	71	50	22	17	10	1.76
374517--374607	32	2.8	33	89	3	139	48	18	18	14	1.81
374478--374612	19	7.6	19	70	19	76	44	20	20	14	1.86
374624--374681	14	3.9	14	79	16	71	10	17	24	48	1.78
374619--374697	32	2.4	33	91	2	133	11	18	22	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374670--374736	19	3.5	19	83	4	89	14	22	23	38	1.92
374682--374736	20	2.8	19	89	5	83	16	23	23	36	1.94
376608--376643	14	2.6	14	90	0	54	30	0	22	47	1.52
376760--376804	19	2.4	19	88	0	63	53	13	15	17	1.73
376769--376808	19	2.1	19	95	0	71	52	15	17	15	1.75
376774--376815	19	2.2	19	86	0	57	54	14	19	11	1.70
376846--376903	20	2.9	20	94	0	98	15	20	24	39	1.91
377955--378013	24	2.5	24	82	0	73	28	16	18	35	1.93
378188--378212	12	2.1	12	100	0	50	72	0	28	0	0.86
380503--380633	19	7.7	19	64	23	85	43	19	22	14	1.87
380503--380629	33	3.8	33	86	4	193	43	19	22	14	1.88
380504--380636	66	2.0	66	95	0	239	42	19	21	16	1.89
380792--380828	14	2.6	14	91	0	65	45	24	0	29	1.53
384327--384425	33	3.0	33	87	1	135	40	25	22	12	1.88
384302--384481	19	9.8	19	74	14	155	45	21	20	12	1.83
384397--384481	39	2.2	38	97	2	161	49	22	17	10	1.77
384487--384523	19	1.9	19	94	0	65	2	16	24	56	1.53
385125--385174	20	2.5	20	96	0	91	26	18	26	30	1.98
385624--385662	19	1.9	19	90	10	60	51	10	5	33	1.58
386014--386058	19	2.3	19	84	7	54	46	28	13	11	1.77
387351--387390	20	2.0	20	85	0	53	25	22	7	45	1.78
395238--395309	37	1.9	37	91	0	117	50	11	13	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395695--395843	75	2.0	75	90	0	235	9	47	9	33	1.68
395761--395906	63	2.3	63	81	5	186	10	45	8	34	1.69
396190--396222	3	11.0	3	100	0	66	0	33	0	66	0.92
397262--397304	22	2.0	22	85	0	59	46	2	11	39	1.53
398913--398966	27	2.0	27	100	0	108	22	18	29	29	1.97
402233--402331	33	3.0	33	87	1	135	37	20	15	27	1.92
410286--410321	2	18.0	2	100	0	72	50	0	0	50	1.00
411364--411405	20	2.0	21	86	13	61	47	11	4	35	1.61
417766--417816	20	2.5	20	93	0	84	29	21	23	25	1.99
420047--420143	45	2.2	45	81	7	108	48	6	15	29	1.69

Tables:   1   2   3