genome.fa.s6235.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006235.1 Hibiscus syriacus cultivar Beakdansim tig00014862_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  996025

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 569 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
829086--829190	9	11.7	9	80	16	105	79	0	9	11	0.95
829085--829134	17	2.9	17	86	13	75	80	0	10	10	0.92
829085--829183	17	5.3	18	72	25	66	78	0	10	11	0.96
830371--830650	55	5.1	55	92	1	483	28	15	28	27	1.96
830371--830653	108	2.6	110	93	2	507	28	14	28	28	1.96
830646--831094	52	8.6	52	93	0	727	28	16	24	29	1.96
830963--831165	52	3.8	53	84	5	175	33	18	23	25	1.97
831364--831406	3	15.3	3	86	13	65	37	0	0	62	0.95
831371--831404	11	3.1	11	100	0	68	35	0	0	64	0.94
831364--831406	14	3.1	14	93	6	70	37	0	0	62	0.95
831777--832431	146	4.5	146	94	0	1084	31	20	26	21	1.98
838199--838399	102	2.0	102	100	0	402	42	14	9	33	1.79
839381--839825	219	2.0	224	96	3	837	41	15	16	26	1.88
849129--849201	18	3.9	18	85	7	110	19	21	31	27	1.97
849128--849202	38	2.0	38	94	0	132	20	22	30	26	1.98
855823--855877	21	2.7	20	80	11	58	41	3	18	36	1.68
855981--856053	18	3.9	18	82	7	101	20	20	31	27	1.97
855980--856054	38	2.0	38	91	0	123	21	21	30	26	1.98
859095--859336	55	4.4	54	83	5	272	33	19	11	36	1.87
859368--859416	18	2.8	17	84	3	62	34	8	28	28	1.86
859370--859416	17	2.7	18	83	3	60	36	8	25	29	1.86
860123--860182	24	2.5	25	81	7	63	73	3	10	13	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
860157--860292	25	5.5	22	75	18	85	75	2	8	13	1.13
860123--860302	10	19.9	9	66	20	51	74	3	7	13	1.18
860373--860410	18	2.2	18	90	4	60	78	5	7	7	1.07
860377--860438	23	2.7	24	87	9	85	79	4	6	9	1.06
860676--860863	55	3.4	55	91	0	304	31	16	11	39	1.85
860732--860818	28	3.1	28	60	3	68	33	16	11	39	1.84
861309--861365	21	2.7	21	86	0	78	28	28	8	35	1.87
863339--863412	31	2.3	32	79	11	80	47	1	0	51	1.09
868412--868436	6	4.2	6	100	0	50	16	0	0	84	0.63
868637--868753	42	2.8	42	84	5	164	18	17	17	46	1.85
868938--868970	12	2.8	12	86	4	50	42	0	0	57	0.98
868950--869039	23	3.5	23	71	22	65	45	1	1	52	1.15
868950--868995	20	2.1	22	84	11	60	41	0	0	58	0.98
869196--869220	10	2.5	10	100	0	50	36	0	0	64	0.94
869258--869328	27	2.6	27	79	16	74	54	0	0	45	0.99
869445--869554	20	5.5	20	97	0	202	36	13	10	40	1.78
869537--869608	30	2.4	30	95	2	128	31	18	6	43	1.76
869537--869608	15	4.9	15	79	3	92	31	18	6	43	1.76
870018--870093	26	2.9	26	74	2	71	40	5	2	51	1.38
870641--870673	16	1.9	18	88	11	52	45	9	0	45	1.35
871661--871696	2	18.0	2	88	0	54	50	0	2	47	1.15
872712--872745	15	2.3	15	89	0	50	26	8	11	52	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
875614--875926	149	2.1	149	95	1	565	28	15	21	34	1.94
880576--880890	151	2.1	149	94	2	551	27	15	21	35	1.94
880858--880902	23	2.0	23	90	0	72	22	26	26	24	2.00
881340--881810	236	2.0	236	97	0	897	31	11	20	37	1.87
887275--887321	22	2.1	22	100	0	94	34	4	4	57	1.38
899102--899145	3	14.7	3	95	0	70	4	34	27	34	1.77
899099--899139	21	2.0	21	100	0	82	7	34	24	34	1.83
900965--901292	111	3.0	108	94	2	552	44	10	7	36	1.68
901354--901389	17	2.1	18	94	5	65	63	2	5	27	1.30
901598--901718	48	2.5	47	82	11	147	23	28	31	16	1.96
901611--901718	49	2.2	48	84	10	141	23	30	30	15	1.95
909586--909748	55	2.9	54	82	9	173	36	21	4	37	1.75
909657--909745	28	3.2	28	67	9	74	35	22	5	35	1.78
909860--910026	60	2.8	59	77	8	178	38	2	24	33	1.71
917540--917725	92	2.0	92	96	2	347	36	21	14	27	1.92
917732--917784	19	2.8	20	77	8	65	54	0	0	45	0.99
919729--919793	6	10.8	6	79	0	58	32	10	33	23	1.89
922540--922749	59	3.5	59	87	1	276	37	7	22	31	1.83
922841--922881	19	2.1	20	90	4	66	43	9	19	26	1.82
923760--923857	16	6.1	16	79	0	106	19	16	19	44	1.86
923760--923857	32	3.1	33	82	5	121	19	16	19	44	1.86
930214--930310	48	2.0	48	100	0	194	28	8	10	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
930220--930328	48	2.4	45	87	7	132	31	6	8	54	1.56
932240--932277	18	2.1	19	90	5	60	47	5	7	39	1.55
934692--934813	40	3.0	40	95	0	217	22	17	27	33	1.96
934918--935042	46	2.8	45	82	8	155	40	8	21	30	1.82
936282--936743	228	2.0	232	98	1	896	35	7	20	35	1.81
940854--940897	17	2.6	17	85	7	63	56	29	0	13	1.38
940849--940900	9	6.4	8	77	18	54	59	26	0	13	1.34
942830--942890	20	2.9	21	87	7	79	18	26	34	21	1.96
944871--944895	12	2.1	12	100	0	50	24	24	8	44	1.80
949171--949223	18	2.9	18	81	10	63	20	16	32	30	1.95
976803--976828	2	13.0	2	100	0	52	50	0	0	50	1.00
978644--978784	31	4.5	31	90	0	201	21	17	20	40	1.91
979514--979557	21	2.1	21	95	0	79	31	25	20	22	1.98
980579--980659	16	5.3	15	72	16	51	34	0	3	61	1.14
980603--980665	24	2.6	25	80	14	69	31	0	3	65	1.09
988530--988696	83	2.0	83	100	0	334	25	14	26	33	1.94
989375--989414	20	2.0	20	90	0	62	20	35	25	20	1.96
989375--989436	23	2.9	21	83	7	72	19	35	25	19	1.95
994776--994860	3	28.0	3	75	15	68	58	1	1	38	1.13
994781--994859	13	5.7	13	81	12	77	58	1	1	39	1.14
994765--994860	16	6.2	16	82	11	112	57	1	1	40	1.13
994764--994859	29	3.4	28	79	12	97	56	1	1	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994776--994859	15	6.0	14	80	13	77	58	1	1	39	1.14

Tables:   1   2   3   4   5

The End!