genome.fa.s6270.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006270.1 Hibiscus syriacus cultivar Beakdansim tig00014949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  949592

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 546 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
894847--897778	172	17.1	172	77	4	2156	36	12	20	30	1.89
894847--898360	346	10.3	343	75	8	2295	36	11	20	30	1.89
896042--897165	173	6.6	162	77	9	643	36	11	20	31	1.89
897826--898360	172	3.1	170	74	11	421	37	11	19	32	1.87
898697--902378	172	21.6	171	74	8	2556	36	12	19	30	1.89
898699--902376	343	10.8	341	76	7	2567	36	12	19	30	1.89
900223--900520	161	1.9	161	80	1	355	36	12	18	32	1.88
902271--902550	142	2.0	141	81	6	325	34	15	20	29	1.93
902405--905037	172	15.4	172	76	5	1819	36	11	20	30	1.89
902942--904724	685	2.6	676	79	7	1705	37	11	20	30	1.89
902456--905037	513	5.0	505	77	7	1848	37	11	20	30	1.89
902392--905037	341	7.7	339	74	9	1495	37	11	20	30	1.89
904926--905170	133	1.8	133	82	0	310	39	7	20	32	1.80
904762--905344	307	1.9	304	81	7	707	37	9	20	32	1.86
905303--905939	341	1.9	340	83	6	847	39	12	17	29	1.87
906397--906962	172	3.3	170	78	4	546	36	12	20	30	1.89
906866--907056	97	1.9	99	81	8	230	36	8	25	29	1.86
907010--908446	171	8.3	171	75	6	816	37	11	19	31	1.88
907010--908114	511	2.1	520	80	4	1241	36	12	19	31	1.89
908494--908868	172	2.2	172	81	2	407	37	11	21	30	1.88
908823--908920	49	2.0	49	86	4	135	34	11	19	34	1.87
909396--909713	158	2.0	158	83	2	397	35	12	22	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
909554--916829	346	21.0	343	72	9	3632	37	12	20	29	1.89
909557--916860	172	42.1	172	71	9	3328	37	12	20	29	1.89
912972--913049	39	2.0	39	84	0	102	44	7	16	30	1.76
909008--917790	686	12.8	683	72	9	4342	37	12	20	30	1.89
913242--916834	517	7.0	511	77	7	2154	37	12	20	30	1.89
916749--916993	133	1.8	134	82	0	312	39	7	20	32	1.80
916585--917166	306	1.9	305	82	6	732	36	10	20	32	1.86
917125--917762	342	1.9	344	83	4	842	39	12	18	29	1.87
918220--918785	172	3.3	170	80	3	571	36	12	20	30	1.89
918694--918882	100	1.9	100	83	4	247	33	7	25	32	1.85
918794--920277	172	8.6	171	76	7	1093	37	11	19	31	1.88
918785--920021	513	2.4	520	79	6	1274	37	11	19	31	1.88
919184--920277	342	3.2	341	79	7	1052	37	11	19	31	1.87
920327--920699	172	2.2	172	81	2	403	37	11	21	29	1.89
920654--920751	49	2.0	49	87	0	142	34	10	20	34	1.86
920791--920824	17	2.0	17	100	0	68	35	0	17	47	1.48
920970--923404	171	14.2	172	74	8	478	37	12	20	29	1.89
921239--921545	158	1.9	158	83	1	391	35	14	21	29	1.92
921389--927583	172	36.1	171	72	9	3765	37	12	20	29	1.90
924761--924835	39	1.9	39	91	0	123	46	10	12	30	1.75
926301--926378	39	2.0	39	97	0	147	43	10	16	29	1.81
927622--927698	39	2.0	39	92	2	129	41	10	18	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927782--944863	172	99.5	172	69	12	6872	37	12	20	29	1.89
930727--930804	39	2.0	39	94	0	138	42	10	17	29	1.83
929329--933689	518	8.6	482	73	14	1799	37	12	21	29	1.90
933907--933979	36	2.0	36	89	7	112	45	10	13	30	1.78
934765--934832	35	1.9	35	82	5	84	32	8	20	38	1.84
934900--938040	170	18.2	164	68	16	594	37	12	20	29	1.90
935389--935463	38	2.0	37	92	2	123	44	12	14	29	1.81
936782--936859	39	2.0	39	92	0	129	42	10	16	30	1.82
938179--938255	38	2.0	38	87	7	111	42	9	16	31	1.80
939731--939808	39	2.0	39	92	0	129	44	11	15	28	1.81
940694--941088	161	2.3	166	81	9	403	39	12	19	28	1.87
941183--941259	39	2.0	39	89	2	120	42	10	15	31	1.81
942702--942779	39	2.0	39	94	0	138	42	10	16	30	1.82
942874--944863	176	11.5	173	73	8	1238	37	12	21	29	1.89
941372--944288	343	8.5	344	72	9	1503	37	12	20	29	1.89
944266--944341	39	1.9	39	94	0	134	44	11	17	26	1.83
944973--945519	172	3.2	168	79	8	524	37	12	21	28	1.90
945757--946165	175	2.4	174	83	6	492	34	10	23	30	1.89
946278--947733	172	8.6	170	74	9	984	37	13	19	28	1.90
946422--947378	497	1.9	494	83	5	1221	38	12	20	28	1.89
947741--948395	171	3.8	169	78	7	602	36	11	20	30	1.89
948493--949133	172	3.8	167	77	5	579	37	12	19	29	1.89

Tables:   1   2   3   4   5

The End!