genome.fa.s6423.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006423.1 Hibiscus syriacus cultivar Beakdansim tig00015498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  772901

Tables:   1   2   3   4   

This is table  3  of  4  ( 463 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339570--339682	35	3.2	34	86	9	156	42	22	0	34	1.60
340737--340848	35	3.2	34	89	2	161	34	0	22	41	1.60
341505--341595	31	2.9	31	72	4	85	35	10	20	32	1.88
349554--349734	72	2.5	72	80	8	217	14	18	24	41	1.88
351701--351777	35	2.1	39	88	11	119	29	11	7	50	1.67
354574--354698	48	2.5	50	89	2	182	28	23	17	31	1.97
355806--355978	71	2.4	73	86	5	255	29	8	10	51	1.66
359610--359665	26	2.2	26	87	6	78	39	8	1	50	1.44
360500--360892	196	2.0	195	96	3	727	38	17	7	36	1.78
362723--362770	20	2.4	20	89	6	71	22	14	8	54	1.67
362733--362797	20	3.2	20	84	0	76	27	21	4	46	1.71
363169--363232	29	2.1	30	83	11	78	57	7	4	29	1.47
368103--368169	30	2.2	31	79	12	77	56	0	5	37	1.24
372287--372355	31	2.2	31	89	0	102	44	7	10	37	1.66
380056--380091	3	11.7	3	94	5	63	63	0	0	36	0.94
381784--381809	7	3.7	7	100	0	52	61	0	11	26	1.30
384362--384428	10	6.1	10	73	13	53	58	17	11	11	1.63
384384--384408	13	1.9	13	100	0	50	56	20	16	8	1.65
384701--384790	14	7.0	14	65	19	61	53	17	13	15	1.73
384701--384802	24	4.2	24	81	5	107	52	17	12	16	1.74
384728--384803	38	2.0	40	86	5	111	51	19	13	15	1.76
386676--386726	22	2.3	21	83	9	66	60	3	3	31	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391273--391332	29	2.1	29	100	0	120	40	3	3	53	1.34
394418--394456	3	13.0	3	100	0	78	66	0	33	0	0.92
395081--395109	14	2.1	14	100	0	58	41	6	24	27	1.80
398472--398513	21	2.0	21	86	4	59	40	16	0	42	1.48
398490--398547	22	2.8	21	77	12	57	41	13	1	43	1.55
400621--400678	21	2.7	22	78	5	73	24	20	17	37	1.93
400668--400700	16	2.1	16	100	0	66	30	18	24	27	1.98
400667--400759	20	4.8	20	84	6	122	37	16	19	26	1.92
400664--400829	20	8.5	20	84	4	112	33	21	19	25	1.97
400743--400830	20	4.4	20	92	0	140	27	27	20	25	1.99
401650--401703	24	2.2	24	93	0	90	20	18	20	40	1.91
401896--401928	14	2.5	13	86	13	50	45	24	21	9	1.80
403744--403796	6	8.8	6	78	0	61	56	22	3	16	1.56
403744--403789	18	2.6	18	100	0	92	56	21	4	17	1.58
403956--404142	20	9.7	20	78	7	181	31	20	19	28	1.97
404135--404228	20	4.7	20	93	0	161	10	20	20	48	1.78
404350--404386	14	2.6	14	91	0	56	51	16	0	32	1.45
405779--405883	21	5.0	21	76	3	104	24	19	34	21	1.96
405779--405887	42	2.6	42	77	2	121	24	19	34	21	1.96
406428--406473	20	2.3	20	92	0	74	21	21	21	34	1.97
406666--406715	19	2.6	19	83	3	55	38	22	22	18	1.94
406722--406769	20	2.4	20	89	0	69	20	20	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406320--407228	294	3.0	294	90	4	1363	35	18	16	29	1.93
407030--407077	20	2.4	20	85	0	69	20	20	25	33	1.97
408989--409076	20	4.4	20	85	1	88	45	23	15	14	1.84
409463--409504	22	1.9	22	95	0	75	19	14	42	23	1.87
409686--409796	20	5.6	20	90	0	159	24	22	25	27	2.00
409686--409823	60	2.3	60	83	2	179	25	21	23	29	1.99
415420--415534	42	2.8	41	89	4	176	16	17	16	49	1.80
415734--415787	22	2.3	23	81	9	65	48	0	0	51	1.00
415745--415825	22	3.5	22	71	15	65	51	1	1	45	1.16
415737--415903	29	5.8	30	68	25	96	46	0	1	51	1.13
415750--415861	54	2.1	52	80	9	129	47	0	0	50	1.13
415830--415901	31	2.4	29	82	15	85	44	0	1	54	1.08
415859--415911	20	2.7	19	73	18	54	47	0	1	50	1.12
415874--415911	11	3.5	11	82	10	51	47	0	0	52	1.00
415906--415950	23	2.0	23	86	0	63	53	2	2	42	1.25
415919--416088	91	1.9	86	81	11	202	51	4	0	44	1.22
416294--416336	14	2.9	15	72	6	52	32	18	4	44	1.71
416294--416352	29	2.0	29	83	6	75	38	18	6	35	1.78
417330--417355	2	13.0	2	100	0	52	50	0	0	50	1.00
417829--417861	16	1.9	18	88	11	52	48	0	6	45	1.27
424064--424124	3	21.0	3	77	12	56	27	4	1	65	1.22
424057--424119	29	2.2	30	85	8	94	25	6	3	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432311--432355	24	2.0	22	82	8	54	28	13	4	53	1.59
432358--432416	27	2.2	26	93	3	100	28	13	15	42	1.85
432419--432577	29	5.6	28	74	11	135	31	10	18	40	1.83
432421--432589	58	2.9	57	89	6	243	29	10	17	42	1.83
432625--432691	29	2.3	29	92	2	109	31	8	14	44	1.76
432641--432822	67	2.9	63	76	9	190	29	14	13	42	1.84
433322--433375	28	1.9	28	85	7	74	22	16	16	44	1.86
433489--433826	46	7.9	45	73	13	268	25	31	19	23	1.98
433387--433909	129	4.1	129	90	2	727	24	31	19	24	1.98
433578--434024	40	10.7	40	71	15	221	23	31	19	26	1.98
433479--433854	86	4.4	86	73	15	285	25	31	19	23	1.98
433789--434010	83	2.7	83	90	4	335	22	29	18	29	1.97
434167--434228	29	2.1	30	87	3	90	25	6	3	64	1.33
435415--435493	40	2.0	40	90	9	128	29	2	15	53	1.55
435423--435502	40	2.1	37	84	11	101	27	3	16	52	1.60
440784--440822	13	3.1	13	85	3	53	82	2	5	10	0.93
443804--443837	17	2.0	17	100	0	68	35	35	5	23	1.79
444576--444628	26	2.0	26	92	0	88	33	13	7	45	1.71
450005--450071	21	3.2	21	89	4	109	65	0	20	13	1.26
458176--458227	21	2.5	21	90	0	77	30	0	23	46	1.53
458417--458459	18	2.4	19	80	11	54	58	2	18	20	1.50
458445--458491	23	2.0	23	84	8	60	48	10	19	21	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458435--458473	18	2.2	18	85	0	51	53	7	15	23	1.67
459927--459964	16	2.5	15	87	8	51	63	13	5	18	1.48
460893--460924	12	2.7	12	95	0	55	28	37	0	34	1.57
462164--462205	6	7.5	6	97	2	63	28	54	16	0	1.42
462168--462208	5	7.6	5	97	2	55	26	53	19	0	1.45
462852--462899	20	2.4	20	89	0	69	45	20	25	8	1.79
462902--462945	21	2.1	21	91	0	70	31	22	18	27	1.97
463488--463620	59	2.2	60	89	1	205	45	13	17	24	1.84
465789--465920	35	3.8	35	78	6	142	36	18	23	21	1.95
466738--466953	57	3.8	56	83	5	231	35	10	12	42	1.77
470551--470614	29	2.2	29	97	2	121	56	6	14	23	1.61
471928--471958	15	2.1	15	100	0	62	12	12	25	48	1.77
478812--478847	18	2.0	18	88	0	54	61	0	0	38	0.96
481556--481606	21	2.4	21	86	0	75	29	19	23	27	1.98
482385--482427	22	2.0	22	90	0	68	41	2	9	46	1.48
484834--484881	23	2.3	22	86	13	66	22	12	0	64	1.27
489719--489756	11	3.4	11	89	7	58	71	10	13	5	1.30
490985--491186	94	2.1	96	94	5	358	40	13	9	36	1.78
491230--491460	101	2.3	98	81	8	254	31	18	12	38	1.88
491430--491525	34	2.8	34	80	4	113	34	17	12	35	1.88
491775--491985	29	7.4	29	76	6	171	30	10	14	44	1.78
491775--491985	28	7.4	28	77	12	171	30	10	14	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491833--492051	87	2.4	86	81	11	244	31	10	13	44	1.78
491936--492153	66	3.3	65	85	5	271	30	12	12	44	1.79
491964--492078	37	3.3	37	69	22	113	32	12	10	45	1.75
492198--492418	116	1.9	116	81	7	266	30	14	12	42	1.83
492319--492438	62	2.0	60	83	8	154	31	14	11	42	1.81
492420--492499	40	2.0	40	90	4	126	30	21	11	37	1.88
492600--492630	15	2.1	15	94	5	55	19	19	9	51	1.74
493311--493545	40	5.5	44	74	12	179	25	32	19	22	1.97
493297--493604	129	2.3	131	87	4	442	25	31	19	24	1.98
493760--493806	3	16.7	3	82	12	64	38	0	0	61	0.96

Tables:   1   2   3   4