genome.fa.s6439.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006439.1 Hibiscus syriacus cultivar Beakdansim tig00015555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  467271

Tables:   1   2   3   

This is table  3  of  3  ( 298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373854--373892	19	2.1	19	95	0	69	25	15	38	20	1.92
378075--379970	148	12.8	148	93	1	3211	46	10	7	35	1.67
378075--379981	297	6.4	297	97	0	3415	46	10	8	35	1.68
380153--380232	35	2.3	35	93	4	135	36	0	21	42	1.53
384679--384750	29	2.5	28	86	4	90	44	9	15	30	1.78
386869--386915	24	2.0	24	83	8	60	2	27	2	68	1.13
386954--387061	33	3.3	34	81	12	111	3	35	1	59	1.26
386962--387050	18	5.3	18	76	15	82	3	35	2	58	1.27
387101--387138	18	2.1	18	85	9	51	0	26	0	73	0.83
387120--387231	27	4.4	25	68	17	70	4	36	1	57	1.30
387179--387279	24	4.0	25	68	23	86	5	37	0	55	1.31
387123--387281	75	2.1	75	100	0	318	5	37	1	55	1.30
387123--387309	75	2.5	75	93	2	293	5	37	1	56	1.29
388482--388814	80	4.2	80	93	0	540	41	24	11	23	1.86
388682--389137	251	1.8	252	96	0	842	40	21	12	25	1.89
390682--390758	35	2.2	35	100	0	154	29	2	10	57	1.46
391358--391399	6	7.3	6	94	5	70	33	47	19	0	1.49
391906--391958	6	8.8	6	95	0	97	0	16	49	33	1.47
392044--392191	21	7.0	21	74	14	133	35	23	20	20	1.96
392047--392185	42	3.3	42	95	2	242	35	24	19	20	1.95
394318--394369	24	2.0	27	89	10	83	71	0	3	25	1.03
394362--394395	12	2.8	13	86	13	54	52	5	0	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395647--395671	13	1.9	13	100	0	50	76	0	0	24	0.80
404681--404721	16	2.6	16	96	0	73	48	7	12	31	1.68
407806--407905	31	3.3	30	88	2	146	38	12	19	31	1.88
408692--408757	22	3.0	22	84	0	87	31	27	16	24	1.96
409042--409087	20	2.3	20	88	0	74	58	21	8	10	1.58
410978--411161	88	2.1	85	92	3	305	41	9	8	40	1.69
416378--416442	13	5.1	13	75	3	60	50	1	1	46	1.20
416384--416444	16	3.9	16	82	2	70	55	1	1	40	1.19
416384--416426	3	13.7	3	80	9	50	58	0	2	39	1.11
417821--417885	31	2.1	31	82	0	76	40	7	9	43	1.65
423907--424132	2	118.5	2	68	21	121	39	1	5	53	1.32
423964--424108	21	6.2	24	73	20	85	40	2	4	52	1.34
423997--424161	29	5.5	30	76	18	125	38	0	3	57	1.19
423963--424134	95	1.8	95	82	9	226	39	1	4	54	1.30
424023--424153	8	15.8	8	78	19	87	39	0	2	58	1.11
423907--424164	53	4.7	55	74	15	173	38	1	5	55	1.30
424011--424164	13	11.5	13	77	17	102	38	0	2	58	1.17
427018--427093	29	2.5	29	79	14	82	73	9	14	2	1.18
428884--428936	18	2.7	19	77	14	54	22	24	28	24	2.00
435723--435755	15	2.2	15	100	0	66	15	24	33	27	1.95
435740--435792	18	2.7	19	77	14	54	22	24	28	24	2.00
435740--435798	22	3.0	20	72	20	52	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441054--441122	6	11.5	6	90	0	111	30	2	31	34	1.73
445102--445150	24	2.0	25	84	11	66	53	2	2	42	1.24
445757--445786	14	2.1	15	93	6	53	43	0	0	56	0.99
445949--445994	14	3.2	14	81	6	56	36	8	17	36	1.81
446192--446245	21	2.6	20	75	18	56	40	1	0	57	1.09
446231--446303	33	2.3	31	82	13	87	46	0	4	49	1.21
446243--446373	31	4.3	29	67	17	70	45	0	4	50	1.22
446422--446531	53	2.1	53	80	11	118	50	1	1	46	1.22
447766--447813	21	2.3	21	100	0	96	22	25	14	37	1.92
462063--462129	21	3.2	21	93	0	107	62	0	2	34	1.10
462063--462129	11	6.4	11	83	8	86	62	0	2	34	1.10
462162--462722	82	6.8	82	86	2	694	36	9	18	36	1.83
462760--462813	25	2.2	25	93	0	90	27	35	0	37	1.57
462759--462844	32	2.9	31	82	12	103	29	31	0	39	1.57

Tables:   1   2   3

The End!