genome.fa.s6526.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006526.1 Hibiscus syriacus cultivar Beakdansim tig00015905_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  502317

Tables:   1   2   3   

This is table  3  of  3  ( 352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330917--332100	166	7.1	166	82	4	1241	24	20	24	29	1.99
331037--332143	248	4.5	247	90	2	1578	24	20	24	29	1.99
331037--332143	497	2.2	498	88	2	1638	24	20	24	29	1.99
339540--339575	11	3.3	11	92	7	56	75	13	0	11	1.06
342171--342196	6	4.3	6	100	0	52	50	0	0	50	1.00
342576--342648	26	2.8	25	83	6	92	79	1	0	19	0.81
342582--342645	9	7.1	9	86	8	78	82	0	0	17	0.66
342582--342648	17	3.9	17	84	5	82	82	0	0	17	0.68
342582--342648	8	8.0	8	88	6	80	82	0	0	17	0.68
342786--342829	4	11.0	4	90	0	70	70	0	2	27	0.99
344044--344080	3	12.3	3	88	0	56	64	5	0	29	1.15
344055--344098	15	2.8	16	86	10	56	56	6	2	34	1.38
344164--344231	33	2.1	32	84	10	86	45	5	4	44	1.48
344191--344392	35	5.5	37	73	16	120	42	6	3	47	1.48
344165--344364	107	1.9	108	83	11	268	42	6	5	46	1.51
344275--344391	39	3.1	36	78	11	103	43	5	5	45	1.50
344766--345013	77	3.2	79	77	10	260	35	13	19	32	1.90
345828--346030	44	4.6	44	86	0	253	29	22	17	31	1.96
345921--345993	22	3.3	23	67	7	69	28	26	16	28	1.97
345944--346014	21	3.3	21	64	14	54	25	29	12	32	1.93
351914--351970	20	2.8	21	75	17	66	28	17	26	28	1.98
359961--359987	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365426--365478	20	2.7	20	78	0	61	66	0	0	33	0.92
365333--365573	120	2.0	117	80	5	268	44	7	7	40	1.60
366999--367064	3	21.0	3	93	6	73	71	0	0	28	0.87
367027--367078	4	13.5	4	81	18	58	75	1	0	23	0.91
367320--367378	17	3.4	17	68	25	50	15	25	11	47	1.79
367547--368202	225	2.9	226	89	3	1029	29	19	13	37	1.90
367422--368180	338	2.2	341	86	5	1036	29	19	13	37	1.90
367546--368202	113	5.8	113	86	2	876	29	19	13	36	1.90
369339--369387	16	2.8	17	78	12	55	46	6	10	36	1.63
369742--369813	10	7.7	9	78	18	76	0	16	0	83	0.65
369742--369826	22	3.9	22	70	11	52	2	15	0	82	0.77
377042--377073	15	2.1	15	94	0	55	46	9	18	25	1.79
380995--381046	20	2.6	19	79	8	59	65	1	0	32	1.04
382600--382656	3	19.0	3	87	7	80	68	3	0	28	1.06
382604--382668	21	3.2	21	83	14	84	70	3	0	26	1.01
382600--382668	9	7.3	10	84	12	60	69	2	0	27	1.02
383381--383406	2	13.0	2	100	0	52	50	0	0	50	1.00
384015--384055	2	20.5	2	100	0	82	48	0	0	51	1.00
385812--385852	2	20.5	2	100	0	82	51	0	0	48	1.00
386370--386409	2	20.0	2	100	0	80	50	0	0	50	1.00
390425--390455	2	16.0	2	93	6	55	48	0	0	51	1.00
392198--392327	62	2.1	62	83	8	158	26	22	7	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392397--392429	2	16.5	2	100	0	66	51	0	0	48	1.00
392482--392803	81	4.0	81	90	0	493	26	24	12	35	1.92
392492--392803	161	1.9	162	92	0	518	26	25	13	34	1.92
392753--393003	68	3.7	68	89	1	369	31	24	13	31	1.93
394574--394649	31	2.4	31	80	2	89	26	31	27	14	1.95
394527--394649	63	2.0	63	82	6	151	25	29	28	17	1.97
396161--396195	18	1.9	18	88	0	52	28	17	0	54	1.43
397485--397518	15	2.3	15	94	0	59	23	23	35	17	1.95
397507--397607	18	6.2	18	74	21	105	13	18	49	17	1.79
397514--397602	31	2.9	31	100	0	178	13	19	50	16	1.78
397518--397585	13	4.8	13	76	16	73	14	20	48	16	1.81
399245--399884	81	7.9	81	88	0	904	27	23	12	36	1.90
399262--399884	323	1.9	325	88	0	935	27	23	12	36	1.91
399832--400021	68	2.8	68	90	1	272	30	23	13	32	1.93
399913--400022	36	3.2	36	63	23	90	30	22	14	31	1.94
400217--400384	55	3.1	54	83	6	187	31	19	13	35	1.90
401080--401182	33	2.8	38	75	14	126	15	10	33	40	1.82
401277--401333	22	2.6	22	77	0	60	31	3	5	59	1.36
401760--401812	18	3.0	18	80	2	63	28	28	7	35	1.84
402016--402239	96	2.3	98	82	9	259	26	22	14	36	1.93
403053--403088	2	18.0	2	100	0	72	50	0	0	50	1.00
403423--403617	95	2.0	96	87	6	279	43	6	8	41	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413806--413876	35	2.0	35	97	0	133	43	21	8	26	1.81
415194--415368	90	2.0	89	90	1	278	37	11	6	45	1.66
422059--422233	90	1.9	90	91	0	287	37	10	6	44	1.66
437949--438102	20	7.7	20	72	7	105	35	24	12	26	1.92
437949--438077	40	3.2	40	78	7	127	37	24	12	25	1.91
437949--438141	20	9.6	20	73	9	88	32	23	13	29	1.94
438030--438161	40	3.3	40	72	5	104	31	21	12	34	1.90
438318--438355	16	2.5	15	84	12	51	28	5	0	65	1.14
439564--439617	23	2.3	23	90	0	90	29	20	27	22	1.98
442232--442291	24	2.5	24	80	0	75	26	16	18	38	1.92
446305--446401	21	4.6	21	93	0	158	19	19	40	20	1.92
446546--446591	4	11.5	4	85	0	65	69	0	4	26	1.07
446820--446860	21	2.0	21	90	0	64	34	36	14	14	1.87
449880--449945	18	3.4	18	78	15	78	18	22	33	25	1.97
456135--456259	64	1.9	65	83	4	164	35	18	20	26	1.95
456888--456957	18	3.7	18	80	14	86	17	24	32	25	1.96
457863--457965	20	5.2	20	90	1	163	48	21	17	12	1.80
458506--458553	20	2.4	20	100	0	96	47	12	16	22	1.80
458506--458566	20	3.1	20	90	2	79	40	14	19	24	1.89
460220--460267	24	1.9	25	87	8	71	50	8	0	41	1.33
460610--460785	54	3.3	54	80	4	185	34	16	14	34	1.90
461843--461878	14	2.8	14	84	16	51	36	0	0	63	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462584--462613	14	2.1	14	93	0	51	70	6	16	6	1.31
463373--463723	30	11.8	29	68	11	154	18	14	11	55	1.68
463464--463555	29	3.1	29	78	3	103	18	10	11	58	1.62
463465--463632	59	2.9	58	79	2	174	18	14	11	55	1.68
463473--463697	59	3.8	58	75	8	170	17	16	11	55	1.69
466553--466577	12	2.1	12	100	0	50	16	32	24	28	1.96
466904--466947	14	3.1	14	86	0	61	11	68	11	9	1.40
469844--469874	16	2.0	16	93	6	55	32	35	6	25	1.82
474929--474973	23	1.9	24	86	4	65	44	4	6	44	1.50
476482--476524	18	2.4	18	96	0	77	25	25	11	37	1.90
476790--476831	6	7.0	6	94	0	75	52	16	14	16	1.75
476778--476831	18	3.0	17	81	10	63	51	14	14	18	1.76
479743--479775	17	1.9	17	100	0	66	54	18	0	27	1.44
489013--489056	21	2.1	21	86	0	61	9	40	15	34	1.79
493791--493854	20	3.2	20	86	8	85	25	17	17	40	1.90
493775--493854	41	2.0	40	82	7	99	26	17	18	37	1.93
495634--495764	51	2.5	51	85	3	165	44	6	12	35	1.70
495671--495775	51	2.1	51	94	0	183	43	6	13	36	1.70
495671--495751	25	3.2	24	68	22	67	43	7	14	34	1.74
499931--500010	26	3.1	26	67	22	78	41	7	13	37	1.73
499906--500010	51	2.1	51	98	0	201	42	7	14	35	1.74
499906--499986	25	3.2	24	68	22	67	43	8	14	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499918--499997	25	3.2	24	67	22	65	42	7	16	33	1.76
500427--500477	18	2.8	18	90	0	75	27	33	21	17	1.96

Tables:   1   2   3

The End!