genome.fa.s6550.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006550.1 Hibiscus syriacus cultivar Beakdansim tig00016004_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1576944

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 954 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964217--964558	94	3.9	84	88	8	411	21	12	18	46	1.83
964280--964581	94	3.2	93	96	0	532	20	11	19	48	1.80
964866--964945	42	1.9	42	84	0	106	21	38	17	22	1.93
966337--966372	14	2.6	14	95	0	63	33	0	22	44	1.53
966479--966562	14	5.1	17	70	24	72	45	17	23	13	1.84
966479--966591	33	3.4	33	96	0	199	46	20	22	11	1.82
966479--966570	19	5.4	19	71	24	96	45	18	22	13	1.84
966673--966700	14	2.0	14	100	0	56	14	21	21	42	1.88
966614--966714	53	1.9	52	91	2	166	15	21	19	42	1.89
966655--966748	33	2.8	34	80	3	127	15	21	22	40	1.91
970220--970265	21	2.2	21	88	0	65	36	17	28	17	1.92
977200--977769	46	12.4	46	93	0	935	22	22	13	41	1.89
983358--983882	46	11.4	46	89	0	735	24	20	12	42	1.87
985902--985939	2	19.0	2	100	0	76	50	0	0	50	1.00
986756--986851	25	3.6	27	77	19	94	38	1	1	59	1.11
986738--986834	45	2.2	44	77	3	106	40	1	1	57	1.12
986833--986896	22	2.9	22	78	2	65	28	0	3	68	1.04
986856--986903	15	3.1	16	77	19	57	25	0	2	72	0.95
986842--986928	37	2.3	37	77	13	88	28	0	3	67	1.06
987324--987372	20	2.5	20	79	0	53	42	12	16	28	1.84
987619--987662	22	2.0	22	95	0	79	36	38	9	15	1.80
989113--989203	47	1.9	47	90	0	146	17	27	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
989112--989214	23	4.4	23	81	2	116	16	25	25	33	1.96
989205--989263	24	2.5	24	78	8	68	20	20	20	38	1.93
989687--989734	24	2.0	24	95	0	87	33	6	8	52	1.57
992862--992911	24	2.1	24	92	0	82	26	16	18	40	1.90
996079--996140	23	2.6	24	76	5	63	17	19	24	38	1.93
996097--996173	23	3.3	23	82	8	86	14	19	23	42	1.87
996119--996193	23	3.2	24	77	7	66	17	20	21	41	1.90
997913--997957	18	2.5	18	96	0	81	28	31	8	31	1.88
999262--999286	13	1.9	13	100	0	50	28	16	0	56	1.41
1000487--1000535	19	2.7	17	84	9	53	26	20	28	24	1.99
1000508--1000696	65	2.9	64	81	9	215	27	19	22	30	1.98
1002886--1002910	13	1.9	13	100	0	50	64	0	0	36	0.94
1003344--1003423	22	3.6	22	76	5	90	25	25	25	25	2.00
1003348--1003442	44	2.2	42	85	7	120	25	22	25	27	2.00
1003348--1003442	21	4.4	21	75	9	77	25	22	25	27	2.00
1006865--1006897	3	11.3	3	93	6	59	36	0	0	63	0.95
1019983--1020021	18	2.2	17	86	4	51	82	0	15	2	0.79
1021108--1021296	54	3.5	54	86	3	265	33	17	25	22	1.96
1021110--1021515	55	7.4	55	78	8	242	33	15	25	25	1.95
1021111--1021507	110	3.6	108	75	9	340	33	15	25	25	1.95
1021773--1021802	3	10.3	3	92	7	53	36	0	0	63	0.95
1026689--1026848	65	2.5	65	83	5	200	28	18	22	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1027837--1027891	6	9.2	6	95	0	74	34	9	1	54	1.43
1028489--1029094	214	2.8	214	88	1	892	36	12	12	38	1.82
1029284--1029447	76	2.2	76	87	4	235	39	13	15	31	1.86
1029488--1030258	200	3.9	198	80	6	839	39	13	13	34	1.83
1030366--1031066	226	3.1	223	82	6	869	32	14	13	40	1.85
1034773--1034828	16	3.3	16	68	22	51	19	21	8	50	1.75
1034904--1035070	91	1.8	92	90	3	275	23	20	13	41	1.88
1034699--1035668	332	2.8	332	84	6	1165	25	20	17	36	1.94
1035099--1035532	227	1.9	221	90	3	681	25	21	16	36	1.94
1035320--1035668	136	2.6	136	92	0	556	24	21	17	35	1.95
1036528--1036597	25	2.8	25	79	16	74	8	14	0	77	0.99
1036529--1036587	19	3.2	19	86	11	70	8	15	0	76	1.01
1036543--1036590	18	2.6	19	83	9	64	8	14	0	77	0.99
1036541--1036606	32	2.1	30	88	5	96	9	15	0	75	1.03
1036533--1036610	24	3.5	25	74	17	66	10	14	0	75	1.04
1036552--1036622	32	2.2	31	80	9	81	8	16	1	73	1.15
1036555--1036627	24	3.1	23	78	7	67	8	16	1	73	1.13
1052920--1053002	34	2.4	34	100	0	166	57	2	8	31	1.41
1053516--1053817	108	2.8	109	73	9	276	32	20	10	36	1.88
1055584--1055619	19	1.9	19	88	5	56	50	13	13	22	1.77
1056827--1057063	44	5.3	44	72	6	181	27	23	19	29	1.98
1056745--1057063	133	2.4	134	94	1	543	28	21	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057452--1057942	39	12.6	39	93	0	802	34	18	19	27	1.95
1057810--1057872	20	3.2	20	65	13	58	33	17	19	30	1.95
1062725--1062767	18	2.4	18	80	7	52	39	2	6	51	1.42
1064821--1065588	44	17.3	44	64	10	140	29	19	20	30	1.97
1064821--1065662	133	6.3	134	86	3	1112	28	19	20	30	1.97
1067135--1067447	150	2.1	155	96	3	591	32	7	10	50	1.64
1068818--1068851	17	1.9	18	88	5	52	41	20	11	26	1.87
1074661--1074711	2	26.5	2	92	7	88	49	0	0	50	1.00
1077992--1078021	7	4.4	7	91	8	53	23	30	30	16	1.96
1077996--1078021	13	2.0	13	100	0	52	23	30	30	15	1.95
1078042--1078111	9	7.3	9	75	12	59	31	24	27	17	1.97
1078074--1078112	21	1.9	21	89	5	62	33	23	25	17	1.96
1083669--1083705	7	5.4	7	90	6	58	24	27	29	18	1.98
1083673--1083699	13	2.1	13	100	0	54	25	29	29	14	1.95
1083717--1083756	9	4.3	9	84	6	53	25	30	30	15	1.95
1083719--1083757	19	2.1	19	100	0	78	25	30	25	17	1.97
1087368--1087409	17	2.5	17	88	7	59	7	21	50	21	1.72
1087557--1087616	3	19.3	3	83	6	75	61	1	0	36	1.06
1088080--1088132	24	2.2	25	86	3	72	30	11	11	47	1.74
1089142--1089187	15	3.0	15	81	6	56	30	2	2	65	1.16
1089210--1089238	2	14.5	2	100	0	58	48	0	0	51	1.00
1092627--1092711	24	3.5	24	85	0	116	24	14	21	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1094662--1095019	148	2.4	152	84	5	435	33	6	9	50	1.60
1100349--1100384	2	18.0	2	100	0	72	50	0	0	50	1.00
1100393--1100435	18	2.4	18	100	0	86	44	6	0	48	1.29
1101241--1101282	15	2.8	15	88	0	57	26	21	9	42	1.83
1101670--1101707	18	2.1	18	90	0	58	18	21	39	21	1.93
1101718--1101794	15	4.9	15	72	9	73	14	12	42	29	1.83
1101702--1101811	30	3.6	30	85	7	148	14	14	40	30	1.86
1101731--1101782	18	3.1	18	70	16	56	13	11	42	32	1.80
1101746--1101801	18	3.3	17	70	14	53	12	12	46	28	1.78
1103734--1103770	19	1.9	19	88	0	56	32	27	16	24	1.96
1103796--1103861	20	3.3	20	75	8	62	31	22	19	25	1.98
1104018--1104063	22	2.1	22	91	0	74	23	43	10	21	1.84
1104474--1104520	20	2.3	20	77	0	58	21	19	19	40	1.92
1104516--1104559	20	2.2	20	87	0	61	13	13	20	52	1.74
1106453--1106521	20	3.5	20	83	0	93	34	23	21	20	1.96
1106517--1106582	33	2.0	34	90	3	107	50	18	16	15	1.79
1106593--1106631	19	2.0	20	90	5	62	12	15	20	51	1.76
1106677--1106715	20	2.0	20	100	0	78	20	10	20	48	1.78
1107219--1107311	42	2.2	42	86	3	125	22	35	19	22	1.96
1107242--1107311	21	3.3	21	68	5	61	22	35	20	21	1.96
1108799--1108896	40	2.5	40	78	6	117	45	24	16	13	1.83
1108814--1108884	20	3.5	20	94	0	115	47	22	16	12	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1108935--1109031	20	4.8	20	92	0	149	27	19	20	31	1.97
1109431--1109466	17	2.1	17	94	0	63	25	2	36	36	1.70
1109611--1109681	20	3.5	20	75	11	81	21	18	28	32	1.96
1109788--1109824	19	1.9	19	88	0	56	24	16	27	32	1.96
1114158--1114239	24	3.4	24	77	3	85	35	18	20	25	1.95
1114222--1114283	23	2.6	24	89	2	99	38	22	17	20	1.93
1114977--1115121	73	2.0	73	94	1	256	23	22	11	42	1.85
1121135--1121197	24	2.6	24	84	0	81	31	25	20	22	1.98
1121177--1121265	24	3.8	24	80	4	101	31	24	21	22	1.98
1121375--1121422	15	3.1	15	82	5	60	39	22	6	31	1.79

Tables:   1   2   3   4   5   6   7   8