genome.fa.s6565.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006565.1 Hibiscus syriacus cultivar Beakdansim tig00016066_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1014065

Tables:   1   2   3   4   

This is table  4  of  4  ( 428 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
826405--826496	32	2.9	31	77	6	94	38	16	18	27	1.92
833464--833513	24	2.1	24	88	0	73	38	10	18	34	1.84
835400--835685	54	5.3	54	85	0	356	26	20	20	33	1.97
842082--842472	54	7.3	54	85	2	446	27	20	19	32	1.97
842082--842472	107	3.6	107	84	5	450	27	20	19	32	1.97
842082--842448	161	2.3	160	85	0	482	27	20	19	33	1.96
842801--842854	22	2.6	21	80	8	65	25	20	14	38	1.91
845973--846018	24	1.9	24	95	0	83	36	13	15	34	1.86
846591--846629	20	2.0	20	89	0	60	41	20	7	30	1.80
849717--849766	24	2.1	24	92	7	84	40	10	14	36	1.79
850170--850213	18	2.5	18	77	3	54	43	9	11	36	1.72
850339--850377	20	2.0	20	89	0	60	41	20	7	30	1.80
860586--860665	25	3.2	25	96	0	151	21	28	33	16	1.95
871530--871629	23	4.3	23	75	11	78	24	27	20	29	1.99
871573--871648	24	3.2	24	70	20	61	26	23	21	28	1.99
875167--875208	21	2.0	20	86	13	59	23	16	9	50	1.75
885552--885606	20	2.7	20	85	2	74	30	14	21	32	1.93
889908--889982	20	3.8	20	90	0	114	22	16	36	25	1.94
906295--906357	29	2.1	30	82	8	76	31	22	7	38	1.83
909157--909206	25	2.0	25	100	0	100	36	28	12	24	1.91
912524--912596	24	3.0	24	95	0	128	43	13	12	30	1.81
914210--914282	29	2.4	31	77	4	78	26	15	9	49	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
915284--915329	13	3.7	12	82	8	56	71	0	4	23	1.03
915284--915333	4	12.0	4	80	16	57	72	0	4	24	1.02
915986--916135	77	2.0	77	85	6	207	58	11	1	29	1.41
917742--917826	5	16.8	5	79	16	59	70	1	8	20	1.19
917770--917825	19	2.9	18	74	10	58	69	0	10	19	1.17
917743--917826	24	3.3	24	77	9	71	70	1	8	20	1.20
920803--920842	18	2.2	18	86	8	55	75	0	0	25	0.81
921457--921519	19	3.2	19	75	4	54	55	11	0	33	1.35
921477--921641	76	2.2	75	84	6	208	57	10	1	29	1.43
924878--924923	21	2.1	23	88	8	69	73	2	0	23	0.94
924926--925059	2	70.5	2	69	22	85	55	4	0	40	1.20
924926--925057	27	4.6	27	74	22	110	55	4	0	40	1.20
924917--925067	23	6.3	24	71	20	111	54	4	0	40	1.26
924928--925085	36	4.5	35	71	23	109	53	5	0	40	1.27
928850--928921	23	3.1	23	78	7	65	37	18	18	26	1.93
928850--928921	24	3.0	24	80	6	67	37	18	18	26	1.93
934680--934720	16	2.6	16	96	0	73	12	24	14	48	1.78
936556--936607	20	2.6	20	100	0	104	26	19	23	30	1.98
936682--936721	20	2.0	21	95	5	73	32	22	20	25	1.98
941635--941704	18	3.9	18	84	0	86	31	10	14	44	1.78
941671--941710	18	2.2	18	86	0	53	35	10	12	42	1.76
941635--941738	36	2.9	35	79	8	86	35	10	13	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941835--941915	41	2.0	41	87	0	117	25	14	16	43	1.86
942008--942343	165	2.0	168	96	3	624	43	8	16	32	1.77
948576--949547	81	12.0	81	91	0	1521	33	10	23	32	1.89
952196--952260	2	32.5	2	100	0	130	50	0	0	49	1.00
956928--956968	20	2.0	20	86	9	57	26	14	17	41	1.88
956880--957025	55	2.6	54	85	6	186	26	23	17	33	1.96
965343--965485	55	2.7	53	81	13	168	26	23	16	33	1.95
966292--966334	20	2.2	20	86	0	59	34	20	20	23	1.96
976483--976571	23	4.0	23	86	7	121	43	23	7	24	1.80
976483--976571	44	2.0	44	84	8	117	43	23	7	24	1.80
984847--984905	24	2.4	25	77	8	68	55	1	0	42	1.09
984936--985079	27	5.3	26	78	10	128	46	3	2	47	1.34
984936--985079	54	2.6	55	83	6	168	46	3	2	47	1.34
985088--985155	20	3.3	20	78	11	84	41	2	1	54	1.24
986712--986749	19	2.0	19	85	10	51	55	2	15	26	1.54
991521--991561	18	2.3	18	83	4	57	36	0	7	56	1.27
994261--994339	31	2.7	29	77	11	79	44	7	12	35	1.71
996660--996758	22	4.5	22	94	2	164	43	0	23	33	1.54
1000548--1000587	19	2.1	19	95	0	71	47	10	17	25	1.78
1005721--1005773	3	17.0	3	80	7	61	60	0	0	39	0.97
1005727--1005771	15	2.9	15	93	3	72	57	0	0	42	0.98
1005897--1005999	45	2.3	45	88	6	156	37	17	19	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1005941--1007192	76	16.5	76	95	0	2209	34	22	19	23	1.96
1007640--1007694	22	2.5	22	80	11	76	40	10	10	38	1.76

Tables:   1   2   3   4

The End!