genome.fa.s6607.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006607.1 Hibiscus syriacus cultivar Beakdansim tig00016212_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1995858

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325008--325166	48	3.3	48	81	1	183	35	20	18	26	1.95
325963--326033	18	3.8	18	81	7	97	8	18	7	66	1.41
325949--326043	38	2.5	38	94	0	163	10	15	8	65	1.46
329061--329109	2	24.5	2	100	0	98	51	0	0	48	1.00
332873--332903	15	2.1	15	93	0	53	45	0	0	54	0.99
333062--333099	20	1.9	20	88	0	58	21	26	10	42	1.85
333864--333907	4	10.8	4	85	4	52	34	0	15	50	1.45
333860--333927	12	5.9	12	75	16	72	33	2	16	47	1.62
333860--333903	8	5.4	8	86	2	61	36	0	13	50	1.42
333863--333927	33	2.0	33	84	6	87	33	3	16	46	1.63
333934--334016	24	3.5	24	75	3	60	33	18	10	37	1.85
334098--334167	24	2.8	24	76	21	72	40	17	7	35	1.77
334125--334186	31	2.0	31	81	12	74	40	20	4	33	1.74
334248--335013	285	2.7	275	80	11	791	31	14	6	47	1.70
335433--335468	2	18.0	2	100	0	72	50	0	0	50	1.00
351348--351385	14	2.5	16	87	8	53	5	13	0	81	0.85
352191--352269	24	3.5	24	73	19	87	30	15	18	35	1.92
352172--352269	44	2.2	44	89	8	155	29	16	20	33	1.94
352867--352911	2	22.5	2	100	0	90	51	0	0	48	1.00
360796--360889	44	2.1	44	90	0	143	34	15	18	31	1.92
362175--362218	21	2.2	19	84	8	52	6	4	36	52	1.49
366735--366806	25	3.0	24	75	22	78	77	5	11	5	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366724--366807	25	3.3	25	67	24	59	77	7	10	4	1.11
368668--368984	58	5.8	54	75	13	242	30	10	20	39	1.86
368668--369042	108	3.4	109	83	4	412	31	10	19	38	1.86
369057--369457	219	1.8	219	84	2	545	26	24	17	31	1.97
370038--370070	16	2.0	17	94	5	59	54	39	0	6	1.25
373710--373752	18	2.4	18	88	0	59	67	0	9	23	1.19
374514--374547	13	2.5	14	85	9	52	55	8	0	35	1.31
377170--377389	96	2.3	95	85	3	300	33	16	23	26	1.96
377712--378235	59	8.9	59	90	1	761	35	13	21	30	1.91
378612--378934	68	4.8	68	90	0	468	30	13	23	31	1.93
378644--378746	31	3.1	30	68	24	82	32	12	21	33	1.91
378884--379035	81	1.9	80	83	6	200	34	13	22	30	1.92
383269--383339	17	4.1	17	85	5	81	38	12	8	40	1.74
385875--385929	20	2.8	20	77	0	56	32	34	12	20	1.90
386503--386556	17	3.2	16	77	15	56	42	0	1	55	1.10
388288--388335	21	2.3	21	85	0	60	25	39	12	22	1.89
388339--388432	21	4.5	21	90	5	136	18	32	27	21	1.96
388946--389042	33	2.9	34	85	3	124	56	4	2	37	1.30
388944--389049	34	3.2	32	82	8	122	55	4	1	37	1.32
389440--390186	128	5.9	128	92	3	1230	31	19	25	23	1.97
390256--390296	8	5.2	8	82	5	57	36	29	0	34	1.58
398967--399112	21	7.1	21	69	4	109	19	16	24	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398972--399152	41	4.4	41	91	1	265	18	18	24	38	1.93
398972--399109	20	6.8	20	70	4	96	19	17	23	39	1.92
398972--399178	41	5.0	40	89	1	207	18	18	23	38	1.93
399078--399193	41	2.8	39	76	14	99	16	19	24	39	1.91
399753--399779	6	4.5	6	100	0	54	0	14	51	33	1.43
399862--399927	19	3.3	19	72	12	69	40	21	19	18	1.91
399871--400201	41	8.1	40	95	2	348	37	24	20	17	1.94
399871--400201	82	4.0	81	92	3	420	37	24	20	17	1.94
400042--400197	21	7.6	21	72	4	147	35	25	18	19	1.95
399871--400199	123	2.7	123	89	5	470	37	24	20	17	1.93
399937--400201	41	6.5	41	97	0	444	36	24	20	17	1.94
400234--400339	20	5.2	20	65	7	61	37	26	17	17	1.93
400241--400343	41	2.5	41	90	0	152	39	26	17	16	1.90
400083--400379	142	2.1	143	89	1	463	35	23	20	20	1.96
402708--402890	39	4.7	39	85	4	219	32	22	25	19	1.97
403782--403813	13	2.5	13	94	0	55	6	21	53	18	1.67
408601--408736	39	3.5	38	81	4	155	33	22	25	19	1.97
410484--410655	86	2.0	86	100	0	344	53	5	12	27	1.61
411089--411166	22	3.3	22	77	16	77	53	1	7	37	1.38
411107--411185	16	5.3	16	69	15	53	50	2	8	37	1.47
411112--411165	27	2.0	27	92	0	90	50	1	7	40	1.41
411089--411199	52	2.3	49	83	10	138	52	2	7	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411395--412123	28	26.8	25	66	23	113	51	2	8	37	1.45
411516--411564	2	25.0	2	95	4	91	48	0	0	51	1.00
411510--411738	22	10.5	22	72	18	119	51	0	8	39	1.38
411592--411736	7	21.8	6	68	20	51	55	1	8	35	1.39
411579--412132	57	9.4	56	73	19	308	53	1	8	36	1.41
411559--412131	14	38.2	17	66	28	155	52	1	8	36	1.42
411786--412114	131	2.5	132	93	3	564	53	1	7	37	1.39
411793--412134	109	3.1	110	82	11	339	53	1	7	37	1.38
411742--412147	131	3.1	132	82	9	140	52	1	8	37	1.41
411639--412100	22	20.9	23	75	15	310	53	1	8	36	1.42
414227--414527	157	1.9	154	89	5	466	34	14	12	37	1.85
418655--418687	17	1.9	17	100	0	66	57	18	6	18	1.60
419331--419387	29	1.9	31	85	7	82	31	17	7	43	1.76
423464--423506	22	2.0	22	95	0	77	37	11	11	39	1.78
431907--432449	270	2.0	273	98	1	1049	32	12	16	38	1.87
435542--435578	19	1.9	19	94	0	65	27	21	35	16	1.94
436421--437223	401	2.0	401	90	0	1268	31	20	18	29	1.97
438402--438575	95	1.8	96	82	1	224	42	18	14	24	1.87
440094--440137	20	2.2	20	92	4	72	4	15	45	34	1.67
441978--442007	15	2.0	15	93	0	51	56	0	0	43	0.99
442179--442261	35	2.3	35	78	17	91	61	3	4	30	1.34
443380--444000	39	15.9	37	88	6	514	20	26	11	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443380--444000	78	8.0	76	88	4	791	20	26	11	40	1.87
443399--444000	117	5.1	117	91	2	922	20	26	11	40	1.88
443770--443834	20	3.3	20	62	12	53	20	26	10	43	1.84
444022--444206	72	2.5	73	90	3	293	40	11	15	32	1.84
445246--445353	54	2.0	54	87	0	153	23	25	14	36	1.93
448350--448391	21	2.0	21	100	0	84	33	9	9	47	1.68
455049--455119	23	3.1	23	95	0	124	29	16	18	35	1.93
455095--455178	35	2.5	33	78	7	89	28	22	11	36	1.90
455666--455712	6	8.0	6	78	4	51	78	2	4	14	0.99
456141--456176	12	2.8	13	87	8	56	66	0	11	22	1.22
459834--459912	39	2.0	40	87	2	115	34	5	12	48	1.63
469738--469786	18	2.5	20	78	18	59	34	12	22	30	1.91
478737--478766	6	5.0	6	100	0	60	50	16	16	16	1.79
479108--479248	55	2.6	55	82	4	151	21	23	9	44	1.82
485497--485541	20	2.3	20	80	3	56	42	6	0	51	1.28
485776--485847	23	3.0	24	89	6	110	36	0	6	56	1.26
486716--486753	19	2.0	19	100	0	76	47	5	26	21	1.71
490971--491017	20	2.3	21	85	7	69	57	2	4	36	1.30
491338--491392	15	3.6	15	73	4	56	40	12	12	34	1.82
491559--491615	21	2.7	21	97	0	105	24	26	28	21	1.99
491811--491865	13	4.2	13	75	13	58	49	12	3	34	1.59
491851--491949	33	3.0	33	94	1	164	45	15	7	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491944--491983	21	1.9	21	94	0	71	47	7	15	30	1.72
494283--494328	12	3.6	12	81	16	56	17	19	17	45	1.85
494282--494321	15	2.9	14	85	14	57	20	17	15	47	1.83
494412--494469	27	2.2	26	81	12	64	24	17	12	46	1.81
499214--499256	20	2.2	20	86	0	59	18	4	23	53	1.63
504486--504547	32	1.9	32	90	0	97	46	11	9	32	1.72
504762--505134	188	2.0	191	98	1	725	37	6	15	40	1.74
510248--510344	46	2.1	46	86	0	131	35	21	23	19	1.96
513784--513833	20	2.5	20	86	0	64	32	26	18	24	1.97
527145--527889	370	2.0	370	99	0	1463	29	13	23	33	1.93

Tables:   1   2   3   4   5   6   7   8