genome.fa.s6607.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006607.1 Hibiscus syriacus cultivar Beakdansim tig00016212_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1995858

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1770805--1770922	59	2.0	60	85	5	159	30	25	16	27	1.96
1773383--1773420	13	2.8	13	92	4	58	31	23	13	31	1.93
1775218--1775277	31	1.9	31	83	6	77	20	25	25	30	1.99
1782910--1783355	56	8.0	56	89	4	632	35	17	11	35	1.87
1783690--1783730	19	2.2	19	86	0	55	29	19	14	36	1.92
1787274--1787410	59	2.3	59	81	2	177	28	18	24	29	1.98
1787511--1787636	47	2.8	45	84	8	157	36	7	23	32	1.84
1788951--1789140	95	2.0	95	100	0	380	46	20	6	27	1.74
1790139--1790187	22	2.2	22	88	0	71	40	6	20	32	1.77
1796750--1796783	17	2.1	16	88	5	50	76	0	8	14	1.01
1797255--1797304	24	2.1	24	85	7	66	60	12	2	26	1.43
1800573--1800616	20	2.2	20	84	4	63	65	0	15	18	1.27
1806941--1806974	17	2.1	16	88	5	50	76	0	8	14	1.01
1807449--1807498	24	2.1	24	85	7	66	60	12	2	26	1.43
1817444--1818801	678	2.0	678	100	0	2716	32	17	18	31	1.94
1818787--1819059	107	2.6	107	84	0	339	38	19	17	24	1.93
1820680--1820714	17	2.1	17	94	0	61	14	22	45	17	1.84
1827872--1827925	5	10.6	5	80	11	65	5	22	51	20	1.67
1827864--1827911	22	2.2	22	92	7	80	12	22	45	18	1.83
1827898--1827925	14	2.0	14	100	0	56	0	21	57	21	1.41
1829371--1829410	20	2.0	20	100	0	80	40	10	0	50	1.36
1829823--1829872	26	1.9	26	91	0	82	30	20	8	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1836229--1836266	12	2.9	14	84	15	62	28	0	0	71	0.87
1836225--1836269	11	3.8	12	83	16	58	31	0	0	68	0.89
1836225--1836277	25	2.1	25	82	6	63	35	0	1	62	1.06
1836285--1836351	34	2.0	34	82	11	84	49	1	2	46	1.26
1838261--1838303	21	2.0	22	86	4	61	30	16	13	39	1.87
1838686--1838737	23	2.3	23	96	0	95	26	23	15	34	1.94
1846296--1846429	23	5.9	23	84	11	161	27	22	25	24	2.00
1847219--1847365	55	2.7	55	89	0	222	29	21	21	28	1.98
1848270--1848298	9	3.2	9	100	0	58	20	10	0	68	1.18
1854597--1854638	20	2.1	20	100	0	84	26	35	0	38	1.57
1859368--1859429	27	2.3	28	86	10	85	38	0	1	59	1.07
1859368--1859416	3	16.7	3	83	12	57	36	0	0	63	0.95
1860775--1860804	2	15.0	2	100	0	60	50	0	0	50	1.00
1872634--1872704	19	3.8	18	78	16	65	33	9	7	49	1.63
1873864--1874612	112	6.7	112	91	1	1112	37	14	20	28	1.91
1874949--1875009	24	2.5	24	84	10	72	37	0	1	60	1.07
1874948--1874996	3	16.7	3	83	12	66	34	0	0	65	0.93
1879202--1879241	12	3.2	12	85	3	53	17	27	35	20	1.95
1879259--1879311	19	2.8	19	85	5	72	26	28	26	18	1.98
1879259--1879341	9	8.7	9	72	12	67	31	27	24	16	1.97
1879259--1879341	19	4.3	18	77	8	67	31	27	24	16	1.97
1886440--1886481	19	2.2	19	91	8	68	28	33	26	11	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1889211--1889369	79	2.0	79	96	0	291	44	25	16	12	1.83
1895293--1895360	26	2.6	26	90	2	109	17	16	20	45	1.85
1896400--1896448	20	2.5	20	100	0	98	44	14	20	20	1.86
1898009--1898043	18	1.9	18	100	0	70	22	42	0	34	1.54
1898172--1898196	13	1.9	13	100	0	50	44	16	0	40	1.47
1903303--1903327	12	2.1	12	100	0	50	40	16	0	44	1.47
1905521--1905570	21	2.4	21	100	0	100	24	26	28	22	1.99
1910020--1910093	20	3.7	20	96	0	130	44	21	16	17	1.86
1910060--1910680	182	3.4	182	88	2	935	43	13	16	26	1.85
1911068--1911129	19	3.3	19	95	0	106	50	0	14	35	1.43
1911068--1911143	19	4.0	18	88	6	89	47	0	15	36	1.46
1912383--1912437	24	2.5	22	77	16	60	41	1	7	49	1.41
1914615--1914664	19	2.6	19	93	0	82	30	2	10	58	1.42
1915034--1916928	199	9.5	199	90	0	2889	41	15	15	27	1.88
1919888--1919959	30	2.4	30	86	4	92	37	2	11	48	1.53
1919904--1919960	30	1.9	30	92	0	96	36	1	15	45	1.57
1920130--1921120	200	4.9	199	87	2	1281	41	15	14	28	1.86
1920130--1921120	401	2.5	399	87	3	1330	41	15	14	28	1.86
1920162--1921249	401	2.7	399	84	5	1309	41	15	13	29	1.86
1921081--1921457	185	2.0	187	87	4	539	35	16	14	33	1.90
1925649--1925693	23	2.0	23	90	0	72	37	17	8	35	1.81
1925565--1925727	87	1.9	87	94	0	290	31	15	12	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1930950--1931052	33	3.1	33	88	2	145	43	12	11	32	1.79
1930977--1931033	18	3.3	18	70	22	59	45	10	10	33	1.73
1931530--1931612	26	3.2	26	71	8	71	38	21	7	32	1.81
1931700--1931752	26	2.0	26	92	0	88	43	13	7	35	1.72
1931677--1931975	126	2.4	126	86	1	411	41	19	6	32	1.77
1941353--1941445	38	2.4	38	84	10	111	49	5	2	43	1.37
1941439--1941481	2	22.0	2	85	4	61	46	0	4	48	1.22
1942115--1943053	164	5.7	163	81	4	1011	24	19	24	30	1.98
1942137--1943053	84	11.1	84	81	4	1011	24	19	25	30	1.99
1948250--1948343	37	2.5	37	82	6	109	47	7	2	42	1.43
1956952--1957047	15	6.0	15	68	17	59	38	19	12	29	1.89
1956949--1957050	33	3.1	33	85	5	134	40	18	11	29	1.86
1956952--1957036	15	5.3	15	72	15	62	38	20	10	30	1.86
1960632--1960871	79	3.0	79	89	0	363	37	10	23	27	1.88
1960724--1960863	45	3.4	43	71	20	127	32	10	26	30	1.90
1960764--1960828	34	1.9	34	90	0	103	35	9	26	29	1.87
1960986--1995858	835	41.6	835	86	5	43530	35	19	9	35	1.84
1960990--1967999	833	8.4	835	94	0	11448	35	19	9	36	1.84
1967267--1968726	727	2.0	728	93	0	2505	35	19	9	35	1.85

Tables:   1   2   3   4   5   6   7   8

The End!