Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006678.1 Hibiscus syriacus cultivar Beakdansim tig00016563_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1086949

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 488 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1053982--1054043
32
1.9
32
90
6
99
88
0
11
0
0.51
1053982--1054034
11
4.9
11
90
4
90
90
0
9
0
0.45
1054977--1055426
52
8.8
52
94
2
777
24
14
23
37
1.92
1054977--1055426
155
2.9
155
94
2
784
24
14
23
37
1.92
1054977--1055432
207
2.2
203
94
1
786
25
14
23
37
1.92
1056061--1056392
119
2.8
118
92
3
539
39
13
20
26
1.90
1056639--1056769
3
43.7
3
95
0
235
34
1
0
64
1.03
1071869--1071906
20
1.9
20
88
0
58
21
26
10
42
1.85

Tables:   1   2   3   4   5

The End!