genome.fa.s6743.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006743.1 Hibiscus syriacus cultivar Beakdansim tig00016935_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  431342

Tables:   1   2   3   

This is table  2  of  3  ( 251 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189855--189956	34	2.8	37	89	10	167	43	14	14	27	1.85
189856--189990	37	3.8	34	84	8	162	42	12	14	30	1.83
190346--190388	18	2.5	17	85	7	61	25	4	2	67	1.22
198806--199030	119	1.9	116	93	3	380	39	17	13	29	1.88
200963--200998	16	2.2	16	100	0	72	47	8	5	38	1.57
204374--204405	11	2.9	11	100	0	64	28	6	65	0	1.16
207759--207790	16	1.9	17	93	6	57	0	25	0	75	0.81
207864--207906	21	2.0	21	86	0	59	16	25	27	30	1.97
210672--210712	13	3.5	13	75	25	54	24	26	26	21	2.00
210658--210724	22	3.0	22	95	2	116	23	28	26	20	1.99
212451--212493	21	2.0	21	86	0	59	16	27	27	27	1.97
217803--217841	14	2.9	13	92	7	69	0	23	0	76	0.78
221797--221847	13	3.9	13	78	0	66	54	7	0	37	1.29
221801--221864	26	2.5	26	84	5	76	54	10	0	34	1.35
232165--232241	12	6.5	12	69	19	54	64	3	2	28	1.24
232211--232270	15	3.8	17	73	13	65	70	0	6	23	1.11
232216--232259	19	2.3	19	84	7	54	70	0	4	25	1.06
233599--233674	3	24.7	3	81	5	89	60	1	0	38	1.05
234023--238112	113	36.3	113	96	1	7446	28	17	15	39	1.90
234491--234535	23	1.9	23	82	13	56	15	24	6	53	1.66
238162--238597	113	3.9	113	88	3	639	28	19	13	38	1.90
238162--238596	225	1.9	224	87	4	644	28	19	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239004--239061	22	2.6	22	88	0	89	37	13	15	32	1.87
247616--247669	14	3.8	14	85	2	63	53	7	14	24	1.66
249230--249267	18	2.1	19	85	5	51	71	0	7	21	1.11
251401--251479	3	25.7	3	82	5	95	60	1	0	37	1.05
251525--251667	2	72.5	2	97	2	272	49	0	50	0	1.00
252895--252963	21	3.3	21	76	13	63	46	0	1	52	1.09
252901--252978	13	5.6	14	73	11	54	48	0	2	48	1.15
253983--254032	26	1.9	26	83	0	64	30	10	4	56	1.51
257565--257607	20	2.3	19	88	11	63	39	9	2	48	1.48
258674--258756	41	2.0	41	88	0	121	31	13	26	28	1.94
260554--260601	23	2.1	23	88	3	71	62	4	10	22	1.44
261421--261465	22	2.0	22	87	12	65	28	8	17	44	1.79
264508--264537	14	2.1	14	93	0	51	36	6	33	23	1.81
265913--265975	31	2.0	31	96	0	117	30	9	31	28	1.89
266899--266948	23	2.2	23	86	13	68	30	8	16	46	1.75
283694--283981	144	2.0	144	98	0	558	32	22	20	23	1.98
286937--286966	15	2.0	15	93	0	51	73	0	3	23	0.98
290777--290845	6	11.5	6	98	0	129	31	52	15	0	1.44
291600--291638	6	6.5	6	100	0	78	0	15	51	33	1.44
291718--291877	20	7.8	20	80	8	162	18	20	25	35	1.96
291719--291881	60	2.6	62	84	5	197	18	20	24	36	1.95
291868--291921	20	2.7	20	94	0	90	11	20	18	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291908--291958	19	2.6	20	90	3	77	15	17	23	43	1.88
292110--292169	31	2.0	30	83	3	75	45	8	0	46	1.33
298815--298901	14	5.5	14	71	24	66	10	24	22	42	1.85
298796--298925	33	3.9	33	95	1	206	11	23	21	43	1.85
298827--298941	20	6.5	19	71	21	79	12	23	22	41	1.87
298890--298948	20	3.0	20	84	0	73	13	22	18	45	1.84
301095--301161	21	3.2	21	66	6	55	23	35	20	19	1.95
301068--301161	42	2.2	42	83	7	111	22	34	21	22	1.97
302519--302554	14	2.6	14	95	0	63	30	0	25	44	1.54
302661--302724	33	1.9	33	96	0	119	45	20	23	10	1.82
302661--302727	19	3.8	19	73	18	72	46	19	22	11	1.82
302732--302881	19	8.7	19	65	20	87	15	22	20	42	1.89
302736--302862	33	3.9	32	87	8	193	14	22	19	42	1.88
302729--302861	66	2.0	66	97	0	248	16	22	19	41	1.90
305123--305147	12	2.1	12	100	0	50	0	28	0	72	0.86
305324--305370	24	2.0	24	91	0	76	36	21	19	23	1.95
306136--306187	21	2.5	21	87	3	70	38	17	23	21	1.93
306176--306254	20	3.9	20	77	9	70	35	22	18	22	1.96
306476--306563	20	4.4	20	72	5	88	38	23	20	17	1.93
306598--306667	19	4.2	16	83	16	58	12	21	18	47	1.82
306609--306657	19	2.6	19	100	0	98	14	20	16	48	1.80
306794--306830	14	2.6	14	86	0	56	48	24	0	27	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308529--308580	20	2.6	20	84	0	68	36	26	25	11	1.90
308567--308627	19	3.5	19	70	21	69	45	18	19	16	1.85
308567--308671	33	3.2	33	93	1	167	49	19	17	14	1.79
308616--308671	14	3.7	14	76	17	58	53	19	14	12	1.72
308612--308647	14	2.8	13	88	12	56	52	16	13	16	1.74
308653--308689	19	1.9	19	89	10	58	51	29	13	5	1.63
308567--308689	65	1.9	66	84	5	169	49	21	16	13	1.78
308685--308781	19	5.7	18	70	23	84	12	18	21	47	1.81
308707--308765	14	3.9	14	76	20	64	10	16	23	49	1.77
308690--308781	33	2.8	33	96	0	166	11	17	21	48	1.79
309276--309321	18	2.6	18	89	0	74	13	15	43	28	1.83
310537--310595	20	3.0	20	87	0	73	42	22	18	16	1.89
310859--310902	22	2.0	22	95	0	79	18	15	45	20	1.85
311091--311142	20	2.6	20	90	0	86	28	21	26	23	1.99
311214--311254	21	2.0	21	85	0	55	34	29	17	19	1.94
315576--315632	29	2.0	29	100	0	114	26	14	14	45	1.82
320267--320350	29	2.9	29	100	0	168	27	14	13	45	1.81
321536--321603	34	2.0	34	85	2	91	35	0	8	55	1.31
327856--328071	31	7.0	31	94	1	362	20	18	21	38	1.94
332282--332497	31	7.0	31	96	1	380	20	19	22	37	1.94
337054--337095	20	2.0	21	90	4	68	40	9	14	35	1.78
337593--337634	20	2.0	21	90	4	68	35	14	9	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346128--346172	23	2.0	23	81	0	54	28	26	24	20	1.99
347615--347645	16	1.9	16	93	0	53	51	22	0	25	1.48
347998--348042	21	2.1	21	87	0	63	15	24	28	31	1.96
351171--351215	23	2.0	23	81	0	54	26	24	26	22	2.00
351330--351398	25	2.8	25	100	0	138	27	26	28	17	1.97
352682--352712	16	1.9	16	93	0	53	51	22	0	25	1.48
353065--353109	21	2.1	21	87	0	63	15	24	28	31	1.96
356037--356075	2	20.0	2	84	5	53	43	0	5	51	1.24
358416--358447	4	8.0	4	92	0	55	71	3	0	25	1.00
364934--364959	2	13.0	2	100	0	52	50	0	0	50	1.00
370433--370499	22	3.0	22	100	0	134	26	26	26	19	1.99
371513--371549	18	2.1	18	90	10	58	24	16	5	54	1.63
372133--372175	21	2.0	21	86	0	59	16	27	27	27	1.97
375307--375373	22	3.0	22	100	0	134	26	26	26	19	1.99
376394--376428	18	1.9	18	88	11	54	22	17	5	54	1.64
377012--377054	21	2.0	21	86	0	59	16	27	27	27	1.97
380131--380176	18	2.5	19	82	10	60	39	0	2	58	1.10
387001--387064	28	2.3	28	86	2	94	43	32	7	15	1.76
391503--392469	483	2.0	483	98	0	1862	25	20	14	39	1.90
394543--394630	43	2.1	42	81	10	99	45	27	0	27	1.54
394596--394643	21	2.3	21	75	3	53	45	25	2	27	1.64
394851--395240	185	2.1	186	92	2	653	42	3	8	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400227--400262	18	2.0	18	100	0	72	38	22	16	22	1.93
405355--405408	23	2.3	24	78	15	60	37	0	5	57	1.22
407035--407077	21	2.0	21	91	8	70	53	0	2	44	1.13
407084--407108	11	2.3	11	100	0	50	48	0	8	44	1.32
407431--407474	19	2.2	20	84	4	54	56	0	0	43	0.99
407454--407516	26	2.4	26	73	19	60	52	1	1	44	1.20
411882--411915	15	2.2	16	89	5	52	67	0	2	29	1.05
415993--416022	12	2.5	12	100	0	60	40	36	0	23	1.55
416144--416194	26	2.0	26	100	0	102	50	17	3	27	1.63
420741--420783	21	2.0	21	91	8	70	53	0	2	44	1.13

Tables:   1   2   3