genome.fa.s692.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000692.1 Hibiscus syriacus cultivar Beakdansim tig00001349_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1095174

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 561 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
907319--907367	23	2.1	23	96	0	89	20	18	24	36	1.94
912123--912176	2	27.0	2	100	0	108	50	0	0	50	1.00
914333--914384	2	26.0	2	100	0	104	50	0	0	50	1.00
917695--917809	57	2.0	57	100	0	230	41	13	13	30	1.84
918089--918172	39	2.2	39	95	2	152	26	26	16	30	1.97
918680--918730	21	2.4	21	93	0	84	13	25	17	43	1.86
923338--923402	8	7.6	8	74	14	51	20	6	0	73	1.03
923332--923418	23	3.4	25	73	20	74	18	6	0	74	1.03
923341--923421	9	9.0	9	75	12	69	19	6	0	74	1.03
923341--923411	36	1.9	37	86	8	101	21	5	0	73	1.04
923336--923431	45	2.2	46	78	14	103	20	8	0	70	1.12
928650--929573	165	5.6	165	87	0	1244	29	24	20	25	1.99
930827--930902	22	3.5	21	70	10	64	17	6	0	76	0.99
931611--931641	2	15.5	2	100	0	62	51	0	0	48	1.00
937629--937667	6	6.2	6	85	8	51	2	35	0	61	1.10
938199--938235	20	1.9	19	89	10	58	45	5	24	24	1.74
938371--938456	37	2.6	31	72	24	77	47	4	1	46	1.30
951694--951751	20	2.7	20	81	10	62	27	22	17	32	1.96
954887--955023	64	2.2	63	80	6	143	24	22	19	32	1.97
959102--959135	16	2.1	16	100	0	68	47	14	17	20	1.83
961228--961283	26	2.2	26	96	0	103	19	28	17	33	1.95
966661--966687	11	2.5	11	100	0	54	51	22	11	14	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
971691--971745	27	2.0	27	82	10	67	67	0	5	27	1.12
973374--973461	23	4.0	21	74	21	81	43	5	2	48	1.39
977515--977548	17	2.0	17	100	0	68	29	11	5	52	1.61
978732--978759	6	4.7	6	100	0	56	14	50	0	35	1.43
979354--979397	21	2.0	22	86	4	63	25	31	25	18	1.97
980151--980210	21	2.9	21	97	0	111	23	28	23	25	2.00
980441--980470	2	15.0	2	100	0	60	50	0	0	50	1.00
983156--983213	29	1.9	31	86	6	84	53	10	12	24	1.68
1003804--1003874	19	3.7	19	98	0	124	30	19	28	21	1.97
1004511--1004587	38	2.0	38	85	5	102	27	16	24	31	1.97
1011386--1011438	18	2.9	18	91	0	88	18	18	33	28	1.95
1014354--1014386	17	2.0	17	88	5	50	42	0	0	57	0.98
1014695--1014752	22	2.6	22	83	0	71	22	41	15	20	1.90
1015868--1015919	21	2.5	21	90	0	86	36	9	23	30	1.87
1016792--1016839	21	2.3	21	85	0	60	16	16	35	31	1.92
1017122--1017240	21	5.7	21	80	4	123	20	32	20	26	1.97
1017128--1017227	42	2.4	41	86	5	137	20	36	19	25	1.95
1018571--1018603	13	2.4	14	95	5	59	30	0	21	48	1.50
1018582--1018732	64	2.4	64	88	1	214	26	1	17	53	1.55
1018658--1018736	37	2.2	37	82	8	101	22	1	16	59	1.44
1018810--1018844	14	2.6	14	90	4	54	8	22	25	42	1.82
1018877--1018927	19	2.6	20	90	6	86	19	19	17	43	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1021575--1021608	12	2.8	12	90	0	50	14	0	29	55	1.40
1022447--1022507	20	3.0	20	80	9	70	29	13	24	32	1.93
1022520--1022583	20	3.2	20	88	0	92	21	17	23	37	1.94
1022449--1022600	81	1.9	82	82	9	195	28	16	23	31	1.96
1022579--1022646	21	3.2	21	89	6	111	36	14	25	23	1.93
1025826--1025862	2	18.5	2	100	0	74	48	0	0	51	1.00
1026253--1026295	17	2.6	16	82	10	50	65	2	4	27	1.25
1030145--1030192	9	5.6	9	79	18	57	27	0	0	72	0.84
1030145--1030192	17	2.8	17	84	6	62	27	0	0	72	0.84
1030241--1030323	33	2.5	33	88	5	123	37	21	14	26	1.92
1030858--1030921	3	20.0	3	84	15	76	29	0	0	70	0.88
1030858--1030926	10	6.7	10	82	14	79	28	1	0	69	0.97
1034958--1035836	84	10.7	81	78	4	494	30	24	20	24	1.98
1034936--1035819	164	5.4	162	83	5	830	30	24	20	25	1.98
1036234--1036298	33	2.0	33	93	0	112	43	18	10	27	1.83
1036849--1036907	3	18.3	3	83	16	66	28	0	0	71	0.87
1038920--1038965	24	1.9	24	90	0	74	60	19	8	10	1.55
1038945--1038971	14	1.9	14	100	0	54	51	29	11	7	1.64
1039302--1039340	19	2.1	19	95	0	69	74	2	0	23	0.94
1039298--1039339	7	6.4	7	81	13	54	71	2	0	26	0.98
1045680--1045706	12	2.2	12	100	0	54	25	18	18	37	1.94
1049811--1050887	193	5.6	193	93	0	1751	24	16	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1049814--1050887	385	2.8	385	92	0	1752	24	16	28	30	1.97
1063910--1063954	18	2.4	18	88	3	63	17	13	40	28	1.88
1063923--1063959	18	2.1	18	94	0	65	13	16	43	27	1.85
1063901--1063996	24	4.0	24	73	18	74	17	11	43	27	1.83
1064466--1064629	34	4.6	36	79	11	167	44	4	7	43	1.53
1064455--1064629	71	2.4	71	77	7	192	44	4	8	44	1.52
1064614--1064683	14	5.3	13	76	11	54	31	0	2	65	1.07
1064643--1064706	23	2.6	26	80	14	73	28	3	0	68	1.04
1065880--1065996	37	3.3	37	85	4	152	24	9	0	65	1.22
1073266--1073290	6	4.2	6	100	0	50	0	0	32	68	0.90
1074098--1074215	49	2.5	47	77	16	118	59	2	6	31	1.37
1077244--1077278	7	4.9	7	86	6	52	0	17	2	80	0.84
1089872--1089937	26	2.4	28	85	10	82	39	0	37	22	1.55
1090272--1090311	20	2.0	20	90	0	62	30	30	15	25	1.95
1090346--1090386	18	2.3	18	100	0	82	24	21	21	31	1.98

Tables:   1   2   3   4   5

The End!