genome.fa.s6932.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006932.1 Hibiscus syriacus cultivar Beakdansim tig00017792_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  664293

Tables:   1   2   3   4   

This is table  2  of  4  ( 425 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200353--200404	21	2.5	21	81	3	61	38	19	25	17	1.93
200393--200546	20	7.7	20	88	4	175	31	25	17	25	1.97
200715--200741	12	2.2	12	100	0	54	7	59	18	14	1.58
200748--200777	14	2.1	14	100	0	60	26	43	0	30	1.55
201072--201116	19	2.4	19	84	0	63	48	24	15	11	1.77
201112--201161	18	2.7	19	90	6	84	12	22	22	44	1.85
201149--201206	14	4.1	14	75	20	66	10	25	27	36	1.89
203378--203444	21	3.2	21	66	6	55	23	35	20	19	1.95
203327--203444	41	2.8	42	81	6	107	22	35	18	22	1.96
204918--204980	19	3.6	19	75	20	73	42	22	23	11	1.85
204996--205126	19	7.7	19	67	23	103	15	23	18	42	1.88
205000--205126	33	3.9	32	88	8	193	15	23	18	42	1.88
204993--205125	66	2.0	66	95	0	239	17	23	18	41	1.90
207417--207441	12	2.1	12	100	0	50	0	28	0	72	0.86
207616--207669	24	2.2	24	90	0	81	40	20	16	22	1.91
208416--208463	20	2.4	20	96	0	87	25	20	31	22	1.98
208432--208526	41	2.3	41	81	3	111	21	18	24	35	1.95
208498--208545	20	2.3	21	82	3	62	20	20	18	39	1.92
209019--209117	31	3.3	31	64	25	84	35	13	12	39	1.81
209009--209206	60	3.3	60	89	0	270	34	15	14	36	1.87
209866--209901	17	2.1	17	90	10	56	33	2	0	63	1.08
226736--227110	44	8.6	42	74	13	192	25	18	7	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226876--226971	50	1.9	50	83	6	124	32	18	8	40	1.81
226928--227110	44	4.3	43	79	10	196	26	20	4	49	1.67
226931--227110	43	4.2	43	78	12	190	26	19	4	50	1.66
230265--230302	20	1.9	20	88	0	58	21	18	36	23	1.95
230365--230441	20	3.8	20	96	0	118	27	16	32	23	1.96
231114--231428	55	5.7	55	91	1	506	36	14	11	37	1.82
232144--232221	35	2.2	34	82	6	93	38	0	16	44	1.48
235197--235367	46	3.8	45	89	2	218	31	21	6	40	1.79
235477--235598	61	2.0	61	83	3	156	32	27	14	25	1.95
237042--237082	19	2.0	21	86	9	59	46	9	7	36	1.65
250186--250223	19	2.0	19	100	0	76	26	31	15	26	1.96
256630--256685	20	2.8	20	86	0	76	37	10	17	33	1.85
256629--256691	20	3.2	20	80	8	74	34	12	17	34	1.88
268155--268281	60	2.1	59	82	8	150	37	16	14	30	1.89
274492--274681	64	3.0	64	78	12	192	31	22	17	28	1.97
284085--284131	19	2.8	16	76	20	51	36	14	21	27	1.93
284062--284131	34	2.1	34	86	5	97	38	14	21	25	1.91
292309--292405	29	3.3	29	71	13	72	38	18	2	41	1.62
292299--292441	60	2.4	59	79	6	137	34	18	5	41	1.74
297336--297370	2	17.5	2	100	0	70	48	0	0	51	1.00
301717--301776	19	3.5	19	70	25	60	20	16	35	28	1.94
301710--301776	32	2.1	32	97	0	125	19	19	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305049--305113	31	2.1	31	94	0	112	32	32	13	21	1.93
305622--305655	16	2.1	17	88	5	52	55	11	23	8	1.63
307140--307179	8	5.0	8	84	9	55	65	2	0	32	1.06
310740--310768	13	2.2	13	100	0	58	37	0	0	62	0.96
310778--311309	273	1.9	273	99	0	1055	41	24	15	18	1.89
318871--318895	5	5.0	5	100	0	50	20	0	20	60	1.37
320349--320512	79	2.1	79	84	2	213	30	21	19	28	1.97
320518--321057	111	4.9	111	91	0	801	31	23	16	28	1.96
321271--321299	13	2.2	13	100	0	58	37	0	0	62	0.96
321949--321996	19	2.8	17	79	17	55	58	16	8	16	1.61
324716--324799	42	2.0	41	81	9	98	51	11	17	19	1.76
328929--329026	37	2.8	36	90	4	155	44	13	13	28	1.81
328923--329035	37	3.1	37	84	6	142	43	14	12	30	1.82
329417--329455	15	2.7	15	84	4	53	23	5	2	69	1.21
329720--329787	24	2.8	24	73	8	68	26	2	0	70	1.01
329724--329787	21	3.2	20	75	12	60	25	3	0	71	1.00
333706--333758	17	3.2	16	79	10	54	79	7	13	0	0.93
333711--333782	24	3.0	24	76	13	58	76	8	15	0	1.01
334434--334488	22	2.5	22	93	0	101	38	25	12	23	1.90
334904--334939	18	2.0	18	88	0	54	19	8	30	41	1.81
335419--335700	36	8.0	36	80	8	321	25	19	14	40	1.89
335377--335700	72	4.6	72	76	10	239	26	19	14	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335475--335663	102	1.9	102	87	4	283	26	18	13	40	1.88
335439--335763	138	2.4	137	84	2	445	27	20	12	39	1.88
335675--335831	68	2.4	68	84	5	205	31	22	8	36	1.85
336475--337408	105	9.0	105	93	2	1470	33	26	17	22	1.96
336480--337408	312	3.0	312	92	2	1426	33	26	17	22	1.96
337954--338055	34	2.9	36	88	5	163	44	13	15	26	1.84
338446--338484	15	2.7	15	84	4	53	23	5	2	69	1.21
338738--338803	24	2.8	24	72	9	64	25	3	0	71	1.01
338742--338797	21	2.7	20	75	8	58	25	3	0	71	1.02
345496--345538	19	2.3	19	95	0	77	58	6	32	2	1.38
348286--348360	28	2.7	28	82	12	91	34	6	18	40	1.77
349907--349937	16	1.9	16	93	0	53	19	9	16	54	1.68
350488--350541	21	2.6	21	78	0	54	38	27	9	24	1.86
356807--356845	4	9.8	4	83	10	53	25	0	25	48	1.51
360394--360447	3	18.7	3	77	7	58	38	3	0	57	1.17
360395--360447	20	2.7	20	81	0	70	39	3	0	56	1.17
361512--361555	15	3.0	15	80	3	54	31	9	4	54	1.52
362434--362594	55	3.0	54	83	9	186	36	8	19	35	1.82
365687--365716	15	2.0	15	93	0	51	53	6	3	36	1.44
367226--367439	76	2.8	76	92	0	347	37	20	19	23	1.94
367384--367493	54	2.0	54	98	0	211	37	21	18	22	1.94
367308--367570	130	2.0	131	96	0	492	35	21	19	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367438--367767	76	4.3	76	98	0	642	34	22	19	23	1.97
367438--367767	153	2.2	152	98	0	642	34	22	19	23	1.97
368444--368519	22	3.5	22	90	3	127	38	14	13	34	1.85
375262--375304	15	2.9	15	75	25	54	60	6	11	20	1.54
378667--378696	15	2.0	15	93	0	51	53	6	3	36	1.44
379995--380050	3	19.3	3	77	14	55	57	0	0	42	0.99
379984--380050	12	6.4	11	80	15	54	55	0	0	44	0.99
379997--380048	20	2.8	19	83	13	65	57	0	0	42	0.98
383145--383204	26	2.4	24	81	13	68	78	0	20	1	0.84
385591--386573	489	2.0	490	96	0	1797	39	14	18	27	1.90
386767--386820	20	2.7	20	88	0	81	27	27	18	25	1.98
386649--386934	139	2.1	136	88	2	428	31	17	18	32	1.94
386896--386934	20	2.0	20	89	0	60	28	23	20	28	1.99
387006--387060	20	2.8	20	82	0	65	29	21	20	29	1.98
386767--387396	119	5.3	119	92	1	1019	33	16	18	31	1.93
387125--387179	20	2.8	20	85	0	74	29	23	20	27	1.99
387264--387496	100	2.3	99	89	2	342	33	16	18	30	1.93
387478--387590	20	5.7	20	80	2	138	28	24	15	30	1.96
387463--387590	40	3.2	40	88	2	186	28	24	15	31	1.96
387738--387810	3	25.0	3	91	5	123	34	1	0	64	1.02
390558--390639	23	3.5	23	90	3	110	24	29	19	26	1.98
393442--393512	33	2.2	31	90	7	106	32	28	9	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393442--393512	31	2.2	33	85	12	94	32	28	9	29	1.89
393882--393917	19	1.9	19	88	5	56	52	0	0	47	1.00
402122--402198	29	2.6	29	91	2	118	46	14	7	31	1.72
402145--402212	29	2.4	29	85	2	84	51	14	5	27	1.65
402258--402338	29	2.8	29	85	12	112	48	11	6	34	1.64
402407--402462	28	2.0	29	92	3	96	44	14	7	33	1.72
402542--402605	29	2.2	29	85	0	83	46	14	4	34	1.65
402098--402735	272	2.3	270	84	4	793	42	12	9	34	1.75
402093--402752	137	4.8	137	81	5	739	43	12	9	35	1.75
402685--402742	29	2.0	29	93	0	98	50	12	6	31	1.66

Tables:   1   2   3   4