genome.fa.s6932.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006932.1 Hibiscus syriacus cultivar Beakdansim tig00017792_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  664293

Tables:   1   2   3   4   

This is table  4  of  4  ( 425 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600983--601085	21	5.0	21	72	5	86	45	28	0	25	1.60
600983--601084	41	2.5	40	80	3	96	46	28	0	24	1.59
601024--601082	27	2.1	28	87	3	84	45	32	1	20	1.61
601152--601259	7	15.4	7	74	3	83	42	33	2	21	1.67
601153--601240	21	4.2	21	79	5	106	45	32	2	19	1.63
602117--602170	22	2.4	23	90	6	85	53	11	22	12	1.70
602295--602346	22	2.4	22	86	0	77	21	17	23	38	1.93
602287--602332	11	4.2	11	85	0	65	21	17	26	34	1.95
602380--602410	16	1.9	16	93	0	53	12	12	25	48	1.77
604569--604604	16	2.3	16	90	4	56	61	2	5	30	1.33
605266--605401	2	68.0	2	100	0	272	50	0	0	50	1.00
607009--607065	3	18.7	3	81	3	69	63	0	3	33	1.12
607382--607829	126	3.5	126	84	4	513	25	20	27	27	1.99
607743--607855	40	2.8	40	80	4	136	22	22	34	21	1.97
608299--608502	66	3.1	64	69	15	168	42	12	14	30	1.83
608533--608605	37	1.9	38	88	2	112	36	10	20	31	1.87
608686--608773	32	2.8	32	85	0	122	28	22	18	30	1.97
609992--610017	9	2.9	9	100	0	52	0	42	0	57	0.98
612216--612255	21	1.9	22	90	10	66	12	10	40	37	1.77
612283--612325	21	2.0	21	100	0	86	30	27	18	23	1.98
612492--612551	29	2.0	31	93	6	106	43	16	6	33	1.74
613338--613385	21	2.3	21	100	0	96	60	18	8	12	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613750--613800	15	3.6	14	74	15	52	52	11	19	15	1.73
613744--613813	27	2.6	27	90	0	113	52	11	20	15	1.73
616231--616268	2	19.0	2	100	0	76	50	0	0	50	1.00
616298--616327	2	15.0	2	100	0	60	50	0	0	50	1.00
617923--617979	3	18.7	3	81	3	69	63	0	3	33	1.12
625726--625792	27	2.6	27	83	4	75	68	13	5	11	1.37
625750--625798	25	1.9	26	83	4	64	73	12	6	8	1.24
625979--626142	76	2.2	75	80	6	170	50	16	9	24	1.74
627753--628046	46	6.8	45	72	15	174	24	17	30	26	1.97
627546--628046	129	3.9	129	84	3	605	24	18	29	27	1.98
627546--628046	257	1.9	260	84	3	679	24	18	29	27	1.98
627887--628088	86	2.4	83	84	4	235	26	18	30	24	1.98
628128--628193	28	2.3	29	84	5	100	48	16	10	24	1.78
628185--628388	66	3.2	63	77	8	180	37	15	20	26	1.92
628689--628850	64	2.5	65	83	5	202	44	12	14	27	1.82
628741--628957	92	2.3	92	84	3	265	42	12	12	31	1.81
628803--628869	30	2.3	30	87	7	95	35	14	13	35	1.86
628901--628997	29	3.4	29	75	9	92	46	11	11	30	1.75
628896--628997	28	3.6	28	74	11	91	44	10	11	33	1.76
629329--629441	36	3.2	35	78	3	127	40	9	17	31	1.82
629753--629793	12	3.4	12	83	12	57	19	0	24	56	1.42
629733--629793	32	1.9	32	93	0	104	19	1	26	52	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629732--629803	32	2.2	32	85	4	101	20	1	26	51	1.56
629732--629803	16	4.5	16	79	6	83	20	1	26	51	1.56
629924--629965	14	2.9	15	85	7	59	35	30	4	28	1.78
633228--633271	20	2.2	20	84	8	54	43	15	20	20	1.88
633977--634035	30	2.0	30	86	0	82	62	6	15	15	1.51
636195--636357	76	2.1	75	80	6	168	49	15	9	24	1.75
637501--637567	3	22.0	3	78	17	50	65	2	2	28	1.22
637608--637639	2	16.0	2	100	0	64	50	0	0	50	1.00
637764--638085	64	5.0	64	93	3	556	43	10	9	36	1.71
637764--638085	129	2.5	129	95	1	574	43	10	9	36	1.71
644753--644807	28	2.0	28	82	7	67	74	9	14	1	1.14
644777--644827	16	3.2	16	83	13	61	74	9	13	1	1.15
645438--645492	22	2.5	22	96	0	101	38	25	12	23	1.90
646239--646352	36	3.1	36	67	9	97	26	16	15	41	1.89
646452--646546	37	2.6	37	89	0	154	16	22	17	43	1.88
646837--647330	106	4.7	106	87	4	725	36	23	18	21	1.95
646841--647330	206	2.3	212	88	3	719	36	23	18	21	1.95
661054--661111	27	2.1	28	93	3	100	32	12	17	37	1.86
663275--663316	21	2.0	21	90	4	68	21	45	21	11	1.84
663397--663438	21	2.0	21	90	0	66	26	21	28	23	1.99
663466--663505	20	1.9	22	90	10	66	37	40	10	12	1.77

Tables:   1   2   3   4

The End!