genome.fa.s6985.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006985.1 Hibiscus syriacus cultivar Beakdansim tig00017996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  663392

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 560 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561442--561570	10	12.4	10	79	12	127	82	0	15	0	0.75
561442--561570	41	3.1	41	82	6	136	82	0	15	0	0.75
561427--561570	5	28.2	5	71	18	86	81	0	15	1	0.79
561429--561570	29	5.0	28	80	11	139	82	0	15	1	0.78
564985--565092	6	17.8	6	72	14	71	78	0	18	1	0.89
564998--565090	9	10.1	9	75	19	59	78	1	19	1	0.87
564996--565081	19	4.3	20	74	12	79	79	1	18	1	0.87
564985--565093	38	3.0	36	76	14	107	77	0	19	1	0.91
564990--565092	19	5.7	18	74	16	70	78	0	18	1	0.90
564989--565092	45	2.3	45	81	8	131	78	0	18	1	0.89
565718--565781	28	2.3	28	86	0	92	40	35	3	20	1.68
567092--567756	275	2.4	275	90	2	1041	28	16	19	35	1.93
567784--567895	54	2.0	55	81	3	127	32	8	20	38	1.84
568595--568919	117	2.8	117	88	0	470	36	16	24	23	1.94
568845--569473	139	4.6	137	86	4	743	35	17	21	25	1.95
568829--569473	278	2.3	271	85	5	844	35	17	21	25	1.95
574855--574916	7	8.6	7	76	13	54	80	1	11	6	0.96
574875--574936	20	3.3	20	77	22	64	79	1	14	4	0.98
574855--574918	17	3.8	16	82	10	67	81	1	10	6	0.94
575710--575782	22	3.2	22	63	32	55	36	23	4	35	1.74
575678--575891	46	4.7	46	93	1	353	33	20	7	38	1.81
579586--579691	13	8.3	12	85	9	97	2	15	3	78	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579582--579653	26	2.8	25	89	8	110	5	13	1	79	0.98
579586--579691	6	16.7	6	76	14	97	2	15	3	78	1.01
579635--579701	24	3.0	22	77	12	57	0	16	4	79	0.90
579641--579700	14	4.6	14	82	16	83	0	16	5	78	0.92
582600--582813	46	4.7	46	94	1	353	33	21	7	37	1.81
582654--582728	24	3.2	24	63	32	63	33	22	8	36	1.84
585279--585342	28	2.3	28	80	0	74	37	35	6	20	1.78
586805--586887	42	2.0	42	85	4	114	22	19	20	37	1.94
586653--587316	275	2.4	275	90	2	1014	28	16	20	34	1.94
587222--587429	57	3.7	56	74	15	180	32	11	18	37	1.87
588157--588478	117	2.7	117	90	0	509	35	16	24	22	1.95
588388--589030	139	4.6	139	88	2	813	35	18	21	24	1.95
588685--588748	17	3.3	19	67	20	51	37	12	26	23	1.90
591127--591201	29	2.5	31	81	12	79	30	22	6	40	1.80
592648--592672	2	12.5	2	100	0	50	48	0	0	52	1.00
601323--601524	74	2.7	74	82	3	228	44	8	15	31	1.78
605334--605380	23	2.0	23	87	0	67	46	4	2	46	1.34
605340--605415	29	2.7	29	79	4	84	44	2	2	50	1.30
605477--605538	30	2.1	29	85	11	81	51	1	4	41	1.33
606553--606615	24	2.5	24	82	14	67	25	9	0	65	1.23
606886--606931	22	2.1	22	84	8	58	15	2	2	80	0.91
611414--611469	24	2.3	24	100	0	112	42	28	8	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611423--611468	15	3.5	15	67	32	50	41	30	8	19	1.82
618189--618840	98	6.6	98	84	5	847	35	25	19	19	1.96
618253--618840	189	3.0	194	91	2	945	34	25	20	19	1.96
620116--620178	24	2.5	24	82	14	67	25	9	0	65	1.23
624365--624426	30	2.1	29	85	11	81	51	1	4	41	1.33
624720--624768	2	24.5	2	100	0	98	51	0	0	48	1.00
625005--625032	2	14.0	2	100	0	56	50	0	0	50	1.00
624742--625274	262	2.0	263	96	0	980	40	8	15	35	1.77
627058--627100	18	2.4	18	92	0	68	20	6	0	72	1.08
627146--627200	28	2.0	28	86	10	78	20	9	0	70	1.13
627251--627282	11	2.9	11	90	0	55	12	3	0	84	0.74
627250--627317	17	4.3	16	71	14	61	16	5	0	77	0.95
631017--631073	29	2.0	29	100	0	114	26	14	14	45	1.82
635695--635751	29	2.0	29	100	0	114	26	14	14	45	1.82
637619--637668	23	2.2	23	89	3	75	46	4	0	50	1.20
637624--637696	29	2.6	29	78	4	78	46	2	2	47	1.31
637762--637823	30	2.1	29	85	11	81	51	1	4	41	1.33
642021--642152	37	3.6	37	81	7	117	26	16	17	39	1.91
642060--642152	36	2.5	37	83	6	109	25	19	15	39	1.90
642170--642208	21	1.9	21	89	5	62	33	15	12	38	1.85
642444--642534	36	2.5	36	85	5	112	29	16	13	40	1.86
642476--642601	36	3.6	36	72	20	124	26	18	12	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642474--642863	66	5.9	66	85	4	500	25	21	13	39	1.90
642474--642863	131	3.0	131	89	1	555	25	21	13	39	1.90
642719--642828	30	3.5	30	68	22	80	27	22	13	36	1.92
642474--642863	197	2.0	199	86	4	547	25	21	13	39	1.90
644448--644479	4	8.0	4	100	0	64	25	0	0	75	0.81
644462--644829	131	2.8	131	82	8	423	22	15	16	45	1.84
644820--644856	16	2.3	17	81	13	51	29	27	5	37	1.79
650647--650709	28	2.2	28	88	0	90	30	1	23	44	1.63
652468--652731	69	3.8	69	81	3	280	22	26	20	29	1.98
652938--652986	25	1.9	26	83	4	64	38	16	12	32	1.86
652862--653720	76	11.3	76	85	1	1071	40	20	11	28	1.86
662322--662364	18	2.4	18	100	0	86	20	23	23	32	1.98
662342--662390	24	2.0	24	88	0	71	20	26	24	28	1.99
663183--663276	38	2.4	38	87	5	136	14	25	24	35	1.94

Tables:   1   2   3   4   5

The End!