genome.fa.s7200.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007200.1 Hibiscus syriacus cultivar Beakdansim tig00018999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  414581

Tables:   1   2   3   

This is table  1  of  3  ( 280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1122--1157	14	2.6	14	91	8	56	5	22	22	50	1.70
1345--1398	24	2.2	24	90	0	81	42	14	18	24	1.88
2226--2292	20	3.3	20	93	0	107	20	19	26	32	1.97
2279--2351	20	3.7	20	96	0	128	20	20	20	38	1.94
2348--2388	21	2.0	21	90	9	66	43	17	21	17	1.87
3129--3170	19	2.3	19	87	4	59	14	33	30	21	1.93
7005--7044	21	1.9	21	90	10	64	37	10	0	52	1.35
9247--9281	13	2.7	13	100	0	70	34	8	14	42	1.76
11038--11071	17	2.0	17	100	0	68	47	23	5	23	1.73
11890--11927	16	2.5	15	95	4	67	21	42	0	36	1.53
12354--12392	2	20.0	2	85	15	55	48	0	2	48	1.15
12468--12809	36	9.7	37	82	12	384	45	3	6	44	1.48
12544--12604	26	2.4	27	91	8	101	45	3	8	42	1.50
12837--12879	3	14.0	3	90	4	59	27	0	4	67	1.10
13287--13333	24	2.0	24	88	8	71	61	27	8	2	1.36
13964--14004	22	1.9	21	85	5	55	12	9	0	78	0.98
14459--14489	4	8.0	4	92	7	55	77	0	0	22	0.77
16035--16092	23	2.5	22	91	8	89	63	12	0	24	1.28
16035--16093	20	2.8	21	89	7	84	64	11	0	23	1.27
23145--23189	24	1.9	24	86	4	65	33	8	8	48	1.65
23193--23263	23	3.0	23	87	6	90	39	5	28	26	1.79
26190--26221	16	2.0	16	100	0	64	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26258--26321	26	2.6	24	76	13	67	37	1	0	60	1.06
26258--26322	9	7.7	9	70	19	50	36	1	0	61	1.05
28043--28087	19	2.4	19	100	0	90	24	20	33	22	1.97
28386--28410	10	2.5	10	100	0	50	84	0	0	16	0.63
30059--30111	5	9.8	5	76	15	52	7	22	50	18	1.72
30052--30112	17	3.3	17	79	20	77	11	22	47	18	1.80
29990--30062	7	10.4	7	93	0	128	26	27	30	16	1.97
30059--30111	22	2.4	22	100	0	106	7	22	50	18	1.72
30110--30264	19	8.1	19	87	7	206	27	28	26	17	1.98
30108--30264	29	5.5	27	80	11	113	27	28	27	17	1.97
30114--30264	9	15.8	9	73	10	104	27	28	26	17	1.97
36765--36817	5	9.8	5	80	15	61	5	22	52	18	1.66
36758--36796	17	2.3	17	95	0	69	7	23	51	17	1.71
36724--36768	7	6.4	7	94	0	81	24	28	31	15	1.96
36765--36817	22	2.4	22	96	0	97	5	22	52	18	1.66
36758--36818	17	3.3	17	75	20	68	9	22	49	18	1.77
36814--36883	9	7.3	9	80	12	68	28	27	28	15	1.96
36814--36863	19	2.7	18	90	9	82	26	30	30	14	1.94
36846--36884	21	1.9	21	89	5	62	33	23	25	17	1.96
38339--38376	2	19.0	2	100	0	76	50	0	0	50	1.00
40412--40456	19	2.2	21	84	7	58	46	0	2	51	1.13
41280--41327	2	24.5	2	85	4	53	43	2	0	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44141--44189	20	2.5	20	80	3	55	32	8	6	53	1.55
48574--48623	20	2.5	20	76	0	55	34	12	22	32	1.90
50016--50267	127	2.0	127	83	3	319	29	21	23	25	1.99
53117--53227	23	4.9	23	81	8	138	29	25	19	25	1.99
53117--53248	46	3.0	44	80	8	158	30	25	18	25	1.98
53221--53270	21	2.4	21	86	6	66	38	28	10	24	1.87
53328--53360	13	2.3	15	90	10	52	36	15	0	48	1.45
53830--53951	54	2.3	54	86	2	165	30	20	18	31	1.96
85330--85400	19	3.7	19	94	0	124	25	21	16	36	1.94
85448--85499	20	2.6	20	93	0	86	11	23	21	44	1.84
85623--85690	6	11.5	6	96	3	129	32	51	16	0	1.45
85623--85693	29	2.4	29	97	2	133	32	50	16	0	1.46
85691--85726	5	7.4	5	96	3	65	36	22	41	0	1.54
86215--86262	6	8.0	6	100	0	96	33	0	33	33	1.58
86442--86535	22	4.4	22	74	8	104	37	26	18	18	1.93
86468--86555	41	2.1	42	83	10	110	40	23	19	15	1.90
86527--86578	20	2.6	20	90	0	86	44	21	23	11	1.84
86914--86939	2	13.0	2	100	0	52	50	0	0	50	1.00
90053--90119	2	33.5	2	86	5	91	46	1	2	49	1.26
96402--96482	39	2.0	40	80	7	92	40	1	3	54	1.26
96548--96605	30	1.9	30	83	13	75	46	0	3	50	1.18
96638--96730	23	3.8	24	79	9	107	49	0	1	49	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96648--96727	18	4.8	18	76	16	73	48	0	1	50	1.08
96638--96783	23	6.3	23	72	19	92	49	0	2	48	1.12
96713--96794	42	2.0	42	81	13	98	50	1	2	46	1.22
97310--97368	23	2.5	23	76	17	59	59	5	0	35	1.20
98136--98193	21	2.8	21	86	0	80	20	20	27	31	1.98
98751--98900	75	2.0	74	94	1	264	44	3	10	42	1.54
103767--103791	12	2.1	12	100	0	50	32	16	0	52	1.44
109822--109858	20	1.9	18	89	10	56	43	0	0	56	0.99
121889--121935	23	2.0	23	100	0	94	25	4	17	53	1.62
122136--122187	21	2.5	21	83	0	68	59	19	1	19	1.47
123874--123919	10	4.5	10	84	10	58	60	17	2	19	1.46
123874--123932	21	2.8	20	82	7	73	59	20	1	18	1.47
124247--124273	2	13.5	2	100	0	54	48	0	0	51	1.00
129725--129762	20	1.9	20	88	0	58	23	2	10	63	1.39
129828--129858	2	15.5	2	93	0	53	45	3	0	51	1.17
129888--130221	37	9.2	36	73	13	233	44	3	6	45	1.47
130059--130113	26	2.0	28	82	6	69	47	1	1	49	1.23
129888--130238	74	4.8	70	75	13	264	44	3	6	45	1.47
130257--130303	3	15.3	3	78	12	51	25	2	0	72	0.96
130799--130832	17	2.0	17	88	0	50	70	23	5	0	1.09
135142--135503	75	4.8	74	76	9	297	43	3	6	45	1.47
135133--135503	37	9.9	37	75	11	262	44	3	6	45	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135516--135568	3	17.3	3	88	11	81	30	0	0	69	0.88
135518--135571	25	2.2	25	93	6	92	29	0	0	70	0.88
135530--135577	25	1.9	25	91	0	78	25	2	2	70	1.09
139448--139486	16	2.4	17	86	4	53	17	25	28	28	1.98
139456--139487	17	1.9	16	93	6	55	15	31	28	25	1.96
141276--141355	31	2.6	31	91	0	124	20	18	21	40	1.92
141278--141369	31	3.0	31	88	3	123	21	18	21	38	1.94
144294--144388	24	4.0	24	78	8	95	22	12	16	48	1.80
145235--145436	95	2.2	92	84	2	251	28	17	17	37	1.92
146007--146036	13	2.3	13	94	0	51	70	0	6	23	1.11
147956--148128	87	2.0	87	90	0	274	41	17	15	25	1.88
150884--150978	21	4.6	21	84	5	131	20	20	27	32	1.97
150909--151003	40	2.3	42	94	3	167	21	20	24	34	1.96
150930--150999	21	3.5	20	72	16	72	20	20	22	37	1.95
150888--151009	61	2.0	60	82	6	147	23	18	23	33	1.97
151641--151722	40	2.0	40	90	0	128	39	24	18	18	1.92
151737--151789	21	2.5	21	84	0	70	18	16	30	33	1.94
154928--155091	31	5.3	31	74	5	116	44	6	4	44	1.50
156428--156465	17	2.2	17	100	0	76	10	23	47	18	1.79
156394--156438	7	6.4	7	100	0	90	26	28	28	15	1.96
156435--156487	22	2.4	22	90	0	79	9	22	47	20	1.79
156484--156543	9	6.3	9	79	11	66	28	30	26	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156487--156543	19	2.9	19	87	5	78	29	31	24	14	1.94
156490--156544	20	2.8	20	88	2	76	29	30	23	16	1.96
163720--163757	17	2.2	17	100	0	76	10	23	47	18	1.79
163727--163776	22	2.2	24	92	7	86	8	22	52	18	1.71
163773--163832	9	6.3	9	79	11	66	28	30	26	15	1.96
163732--163785	14	4.3	13	78	21	62	11	24	48	16	1.79
163776--163832	19	2.9	19	87	5	78	29	31	24	14	1.94
163779--163833	20	2.8	20	88	2	76	29	30	23	16	1.96
164897--164931	18	1.9	18	88	0	52	34	25	11	28	1.91
166261--166337	38	2.1	36	82	4	91	49	3	1	45	1.28

Tables:   1   2   3