Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007200.1 Hibiscus syriacus cultivar Beakdansim tig00018999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  414581

Tables:   1   2   3   

This is table  3  of  3  ( 280 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
351816--351871
10
5.6
10
85
6
78
35
26
21
16
1.94
351816--351872
21
2.8
20
87
7
80
35
26
21
17
1.95
357815--357908
46
2.1
45
80
6
100
46
3
1
48
1.25
358062--358114
2
26.5
2
100
0
106
49
0
0
50
1.00
365383--365454
32
2.2
32
82
4
83
19
29
27
23
1.98
367468--367500
17
1.9
17
88
11
50
18
27
21
33
1.96
367835--367871
17
2.2
17
90
0
56
48
0
0
51
1.00
367917--367962
21
2.2
20
84
3
56
47
0
0
52
1.00
367826--368019
25
7.8
26
64
24
82
47
0
2
49
1.17
368176--368214
19
2.2
18
90
9
62
56
0
0
43
0.99
368183--368238
27
2.1
27
86
6
78
51
0
0
48
1.00
368183--368251
22
2.9
24
77
20
74
53
0
0
46
1.00
368174--368258
21
4.2
19
71
23
59
52
0
0
47
1.00
370732--370779
21
2.3
21
92
0
78
22
16
29
31
1.96
373015--373086
22
3.3
23
75
17
75
48
0
0
51
1.00
373089--373137
23
2.1
24
92
3
82
51
2
6
40
1.38
379431--379473
2
21.5
2
100
0
86
51
0
0
48
1.00
380360--380473
12
9.1
13
71
16
89
39
0
0
59
1.03
380362--380412
19
2.8
18
82
8
59
33
0
1
64
1.05
380401--380509
24
4.7
24
74
21
106
46
0
0
52
1.06
380367--380535
69
2.4
69
87
6
243
42
0
1
56
1.11
380395--380472
26
3.0
27
82
12
94
44
0
0
55
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
380445--380548
21
4.9
21
68
28
60
45
1
0
51
1.18
380393--380532
14
11.5
12
67
24
55
44
0
0
54
1.10
380530--380591
19
3.3
19
78
15
58
37
1
0
61
1.06
381027--381086
31
1.9
31
93
0
102
45
6
8
40
1.61
385113--385166
21
2.6
21
96
0
99
25
16
27
29
1.97
385155--385429
20
13.6
20
79
8
265
14
22
22
40
1.91
385218--385289
22
3.4
22
71
11
78
18
20
25
36
1.95
385239--385334
19
4.8
19
74
12
86
16
21
19
41
1.90
385180--385409
61
3.8
60
78
11
245
15
21
22
40
1.91
385134--385437
41
7.5
40
78
6
251
17
21
22
38
1.93
386158--386251
22
4.5
22
75
9
97
37
24
18
20
1.94
386136--386252
22
5.7
20
70
12
76
38
23
17
20
1.93
386194--386300
40
2.7
40
86
7
137
38
20
20
20
1.94
386202--386269
19
3.5
19
76
7
73
41
20
20
17
1.91
389020--389052
14
2.4
14
100
0
66
6
18
27
48
1.71
389020--389061
14
3.0
14
92
0
57
9
14
23
52
1.71
413165--413240
40
1.9
38
92
5
125
22
14
9
53
1.68
413995--414581
2
299.0
2
95
3
1061
49
0
50
0
1.02

Tables:   1   2   3

The End!