genome.fa.s74.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000074.1 Hibiscus syriacus cultivar Beakdansim tig00000136_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1055225

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 495 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
741001--741038	20	1.9	20	94	0	67	21	21	34	23	1.97
743120--743153	13	2.6	13	90	0	50	41	5	11	41	1.66
743611--743712	23	4.6	23	91	3	156	25	21	30	22	1.99
748891--748926	16	2.2	16	100	0	72	25	5	27	41	1.77
750652--750676	2	12.5	2	100	0	50	48	0	0	52	1.00
751275--751306	16	2.0	16	93	0	55	65	6	18	9	1.42
754173--754244	17	4.2	17	78	3	63	41	8	13	36	1.75
754200--754243	18	2.5	18	85	10	56	43	11	9	36	1.72
755131--755179	23	2.1	23	85	7	64	26	22	26	24	2.00
759950--760033	23	3.7	23	79	16	95	29	27	22	20	1.98
764801--764862	17	3.6	17	82	4	70	40	9	14	35	1.79
764818--764861	18	2.5	18	85	10	56	43	11	9	36	1.72
764938--764983	17	2.7	18	73	10	51	43	10	13	32	1.78
767296--767327	14	2.3	14	94	0	55	21	0	0	78	0.76
768819--768889	17	4.2	17	81	3	72	40	7	12	39	1.70
782554--783307	105	7.2	105	92	1	1215	33	25	18	23	1.97
785212--785241	2	15.0	2	100	0	60	50	0	0	50	1.00
786016--786056	15	2.7	16	77	11	50	12	31	0	56	1.36
788701--788750	17	2.9	17	84	0	64	44	4	14	38	1.63
790779--791129	39	8.7	39	69	14	160	46	12	5	35	1.66
790880--791129	78	3.2	79	75	12	219	46	12	5	35	1.64
790877--791137	117	2.2	117	79	3	283	46	12	6	34	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
791194--791509	58	5.4	58	83	6	329	40	13	8	37	1.75
791645--791887	45	5.4	45	79	0	243	39	17	9	33	1.83
791634--791887	90	2.8	89	82	3	278	38	16	10	34	1.83
791645--791887	135	1.8	135	83	0	324	39	17	9	33	1.83
795523--795809	137	2.1	136	83	5	382	26	13	24	35	1.92
798643--798737	13	7.1	13	73	14	68	1	20	1	77	0.88
798660--798749	10	9.0	10	75	17	71	1	20	0	78	0.81
798638--798743	21	4.7	21	75	20	83	0	19	0	78	0.87
798661--798749	41	2.0	44	81	14	105	1	20	0	78	0.81
806506--806552	4	11.8	4	95	0	85	74	2	23	0	0.93
807827--807874	20	2.3	22	75	20	57	66	2	6	25	1.26
807837--807878	20	2.0	21	90	4	68	69	0	4	26	1.08
807991--808100	54	2.0	54	100	0	220	41	26	12	19	1.87
819872--819945	36	2.1	36	100	0	148	27	16	2	54	1.56
819873--819937	19	3.5	20	70	18	68	27	18	3	50	1.61
823710--823835	46	2.8	45	89	3	182	30	23	6	38	1.80
832401--832476	13	6.0	13	80	6	66	30	17	15	36	1.91
832411--832466	24	2.2	25	84	6	69	32	16	12	39	1.85
832533--832574	13	3.2	13	89	0	57	33	19	7	40	1.78
832644--832677	2	17.0	2	100	0	68	50	0	0	50	1.00
849935--849985	25	2.0	25	100	0	102	23	15	5	54	1.63
857197--857336	64	2.2	63	80	7	149	33	17	22	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
858603--858680	31	2.5	31	83	6	88	19	19	24	37	1.94
858626--858721	30	3.2	30	83	2	95	16	18	29	35	1.93
858646--858724	29	2.7	30	84	2	97	15	18	30	35	1.92
863185--863249	31	2.1	31	82	5	78	20	20	23	36	1.95
866813--866856	2	22.0	2	100	0	88	50	0	0	50	1.00
870212--870255	12	3.8	12	81	6	63	36	29	4	29	1.77
870212--870259	23	2.1	23	96	0	87	33	29	4	33	1.77
871750--871826	29	2.7	29	100	0	154	37	11	15	35	1.84
881053--881368	166	1.9	166	97	0	596	32	6	21	39	1.79
881348--881379	11	2.9	11	100	0	64	56	0	15	28	1.40
889669--889950	40	7.1	40	95	0	501	23	16	26	32	1.96
890230--890465	40	5.9	40	95	0	427	22	16	26	33	1.96
889715--891263	515	3.0	515	98	0	2947	27	14	21	36	1.93
890745--890980	40	5.9	40	95	0	409	24	16	25	33	1.96
901541--901581	20	1.9	22	85	14	59	41	0	14	43	1.45
901768--901817	25	2.0	25	96	0	91	44	12	22	22	1.85
902298--902393	18	5.8	18	72	22	93	19	20	33	26	1.97
902291--902379	46	1.9	46	95	0	160	20	20	30	29	1.97
905804--905840	18	2.1	18	94	0	65	29	8	27	35	1.85
912317--912403	36	2.3	37	92	5	140	34	6	10	48	1.64
914785--914830	16	2.6	18	80	16	60	54	0	0	45	0.99
915531--915555	6	4.2	6	100	0	50	48	16	0	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
917429--917483	23	2.4	23	87	3	85	20	18	23	38	1.93
921755--921853	23	4.5	22	78	6	101	18	21	24	36	1.95
922074--922098	2	12.5	2	100	0	50	0	0	48	52	1.00
923239--923319	2	40.5	2	100	0	162	50	0	0	49	1.00
929246--929273	13	2.2	13	100	0	56	85	0	14	0	0.59
929617--929647	13	2.4	13	94	0	53	67	6	0	25	1.14
929730--930021	117	2.5	117	90	3	446	32	33	15	18	1.93
930973--931107	29	4.7	29	94	0	234	42	17	5	34	1.73
937326--937523	108	1.8	107	95	3	362	31	32	16	19	1.94
938475--938630	29	5.4	29	87	4	208	42	12	6	37	1.69
939882--939907	3	8.7	3	100	0	52	69	0	0	30	0.89
946145--946211	15	4.2	17	77	11	70	19	26	31	22	1.98
946157--946211	15	3.5	15	80	9	74	18	27	32	21	1.96
946145--946211	32	2.1	32	97	0	125	19	26	31	22	1.98
948552--948592	18	2.3	18	95	0	73	19	51	19	9	1.74
950093--950127	5	7.0	5	93	0	61	22	60	17	0	1.37
952625--952735	48	2.3	48	82	3	125	20	13	15	50	1.77
957277--957364	24	3.7	24	76	11	81	22	12	15	48	1.79
959753--959811	26	2.2	27	85	8	77	22	22	10	45	1.81
961113--961166	21	2.5	21	90	3	81	40	16	22	20	1.91
961113--961188	12	6.8	11	73	8	57	38	18	23	19	1.93
961214--961253	21	1.9	21	94	0	71	30	27	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
961898--962051	31	5.0	31	88	0	209	31	20	16	31	1.95
967823--967865	12	3.8	12	78	12	54	46	16	16	20	1.84
968577--968713	31	4.4	31	81	5	150	31	18	17	32	1.95
974000--974038	20	2.0	20	84	0	51	23	5	23	48	1.70
974214--974274	20	2.9	21	85	7	70	19	26	32	21	1.97
980442--980469	11	2.5	11	100	0	56	14	35	0	50	1.43
981786--981833	14	3.4	14	80	5	60	60	8	6	25	1.49
981870--981925	29	1.9	29	88	0	85	60	0	8	30	1.27
982271--982297	14	1.9	14	100	0	54	77	7	0	14	0.97
983611--983669	22	2.7	21	79	10	64	66	6	0	27	1.17
983628--983675	23	2.1	23	88	7	71	70	8	0	20	1.12
983853--983922	30	2.3	31	80	11	83	28	22	4	44	1.72
984308--984480	90	1.9	89	90	3	276	39	10	6	42	1.66
989307--989379	35	2.1	35	94	0	128	28	13	27	30	1.94
990890--990929	18	2.2	18	86	8	55	5	10	15	70	1.32
991570--991674	49	2.3	47	80	12	112	54	12	1	31	1.49
993226--993370	46	3.2	45	82	8	136	47	5	8	37	1.58
993298--993387	46	2.0	46	97	0	171	45	7	11	35	1.69
993385--993554	73	2.3	70	81	8	180	49	4	5	41	1.44
993385--993571	35	5.1	35	77	11	148	48	4	5	41	1.47
993386--993530	39	3.9	38	78	14	160	49	3	5	41	1.43
993501--993690	79	2.4	79	76	13	178	48	2	5	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994875--994916	16	2.7	15	80	16	50	19	4	2	73	1.12
995108--995172	14	4.3	14	77	18	60	20	4	0	75	0.98
995132--995194	29	2.1	30	85	8	85	20	6	0	73	1.05
995141--995194	22	2.5	20	80	14	54	20	7	0	72	1.08
1000362--1000765	80	5.0	80	76	8	406	29	23	21	25	1.99
1000319--1000754	84	5.4	81	77	7	422	30	22	21	25	1.99
1000363--1000758	164	2.5	160	90	4	593	29	23	21	25	1.99
1000364--1000823	158	2.9	155	83	7	399	30	23	20	25	1.98
1001441--1001533	40	2.3	41	81	10	111	48	4	8	38	1.54
1001437--1001531	42	2.3	42	82	12	115	49	4	8	37	1.53

Tables:   1   2   3   4   5