Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000074.1 Hibiscus syriacus cultivar Beakdansim tig00000136_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1055225

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 495 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1001468--1001651
71
2.6
72
82
9
216
50
4
8
37
1.52
1001462--1001661
34
5.6
34
68
17
104
49
4
8
37
1.54
1001525--1001728
37
5.7
35
70
9
124
48
4
6
40
1.50
1001480--1001672
71
2.8
68
80
9
208
50
4
7
38
1.49
1001523--1001705
71
2.5
70
81
7
188
49
4
6
39
1.47
1001749--1001817
35
2.0
34
83
5
86
49
1
4
44
1.31
1003292--1003335
22
2.0
23
86
4
63
20
4
2
72
1.13
1003810--1003854
23
2.0
23
100
0
90
40
11
4
44
1.60
1007354--1007395
20
2.2
19
86
4
57
30
4
38
26
1.77
1007872--1007896
6
4.2
6
100
0
50
36
48
16
0
1.46
1021246--1021276
16
1.9
16
100
0
62
25
6
29
38
1.81
1022402--1022433
11
2.9
11
90
0
55
53
6
18
21
1.67
1048730--1048842
59
1.9
59
89
3
174
32
19
12
35
1.89
1049364--1049524
63
2.5
62
82
9
175
26
22
17
33
1.96
1054642--1054688
3
16.0
3
91
4
78
65
0
2
31
1.04

Tables:   1   2   3   4   5

The End!